GWAS1212762_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1212762_H (cardiac troponin I measurement QTL GWAS1212762 (human)) Homo sapiens

Symbol: GWAS1212762_H
Name: cardiac troponin I measurement QTL GWAS1212762 (human)
RGD ID: 597116688
Trait: cardiac troponin I measurement
Measurement Type: blood troponin level   (CMO:0001283)    
LOD Score: Not Available
P Value: 1.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381859,333,237 - 59,333,238RGD_MAPPER_PIPELINEGRCh38
GRCh371857,000,469 - 57,000,470RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1212762_HHumanblood troponin level  IAGPrs2298711405850206 GWAS_CATALOGPMID:31014085

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1212762_HHumancardiac troponin I measurement  IAGPrs2298711405850206 GWAS_CATALOGPMID:31014085

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
732234LMAN1lectin, mannose binding 1185932782359359265Human


Peak: (rs2298711)
Human AssemblyChrPosition (strand)Source
GRCh381859,333,237 - 59,333,238RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597116688GWAS1212762_Hcardiac troponin I measurement QTL GWAS1212762 (human)1e-11cardiac troponin I measurementblood troponin level (CMO:0001283)185933323759333238Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1212762_H GCST008309 Cardiac troponin-I levels 14,579 European ancestry individuals A NR 1E-11 11 rs2298711 0.083 cardiac troponin I measurement (EFO:0010071)
 PMID:31014085
GWAS1743632_H GCST90315411 MCFD2/VSIR protein level ratio 43,509 European ancestry individuals ? NR 2E-28 27.699 rs2298711 0.110217 MCFD2/VSIR protein level ratio in blood (OBA:2053792)
 PMID:38412862
Database
Acc Id
Source(s)
GWAS Catalog GCST008309 GWAS Catalog

Note Type Note Reference