GWAS1205261_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1205261_H (platelet component distribution width QTL GWAS1205261 (human)) Homo sapiens

Symbol: GWAS1205261_H
Name: platelet component distribution width QTL GWAS1205261 (human)
RGD ID: 597109187
Trait: platelet size trait   (VT:0010457)    
Measurement Type: platelet distribution width   (CMO:0001350)    
LOD Score: Not Available
P Value: 1.0E-21
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38123,279,356 - 3,279,357RGD_MAPPER_PIPELINEGRCh38
GRCh37123,388,522 - 3,388,523RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1205261_HHumanplatelet distribution width  IAGPrs78278054405850206 GWAS_CATALOGPMID:32888494

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1205261_HHumanplatelet size trait  IAGPrs78278054405850206Based on the EFO term IDGWAS_CATALOGPMID:32888494

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1205261_HHumanplatelet component distribution width  IAGPrs78278054405850206 GWAS_CATALOGPMID:32888494

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1602896TSPAN9tetraspanin 91230773793286559Human


Peak: (rs78278054)
Human AssemblyChrPosition (strand)Source
GRCh38123,279,356 - 3,279,357RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597109187GWAS1205261_Hplatelet component distribution width QTL GWAS1205261 (human)1e-21platelet size trait (VT:0010457)platelet distribution width (CMO:0001350)1232793563279357Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1205261_H GCST90002401 Platelet distribution width 408,112 British individuals C 0.0579380000000001 1E-21 21 rs78278054 0.04649622 platelet component distribution width (EFO:0007984)
 PMID:32888494
Database
Acc Id
Source(s)
GWAS Catalog GCST90002401 GWAS Catalog

Note Type Note Reference