GWAS1198178_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1198178_H (erythrocyte count QTL GWAS1198178 (human)) Homo sapiens

Symbol: GWAS1198178_H
Name: erythrocyte count QTL GWAS1198178 (human)
RGD ID: 597102104
Trait: erythrocyte count
Measurement Type: red blood cell count   (CMO:0000025)    
LOD Score: Not Available
P Value: 3.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38123,122,550 - 3,122,551RGD_MAPPER_PIPELINEGRCh38
GRCh37123,231,716 - 3,231,717RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1198178_HHumanred blood cell count  IAGPrs7963344405850206 GWAS_CATALOGPMID:32888494

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1198178_HHumanerythrocyte count  IAGPrs7963344405850206 GWAS_CATALOGPMID:32888494

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1602896TSPAN9tetraspanin 91230773793286559Human


Peak: (rs7963344)
Human AssemblyChrPosition (strand)Source
GRCh38123,122,550 - 3,122,551RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597052034GWAS1148108_Herythrocyte count QTL GWAS1148108 (human)3e-10erythrocyte countred blood cell count (CMO:0000025)1231225503122551Human
597102104GWAS1198178_Herythrocyte count QTL GWAS1198178 (human)3e-09erythrocyte countred blood cell count (CMO:0000025)1231225503122551Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1198178_H GCST90002403 Red blood cell count 408,112 British individuals T 0.166671 3E-9 8.523 rs7963344 0.017538488 erythrocyte count (EFO:0004305)
 PMID:32888494
GWAS1148108_H GCST007069 Red blood cell count approximately 445,000 European ancestry individuals ? NR 3E-10 9.523 rs7963344 N/A erythrocyte count (EFO:0004305)
 PMID:30595370
Database
Acc Id
Source(s)
GWAS Catalog GCST90002403 GWAS Catalog

Note Type Note Reference