GWAS1196032_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1196032_H (protein measurement QTL GWAS1196032 (human)) Homo sapiens

Symbol: GWAS1196032_H
Name: protein measurement QTL GWAS1196032 (human)
RGD ID: 597099958
Trait: protein measurement
LOD Score: Not Available
P Value: 7.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh387112,036,530 - 112,036,531RGD_MAPPER_PIPELINEGRCh38
GRCh377111,676,585 - 111,676,586RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1196032_HHumanprotein measurement  IAGPrs17159180405850206 GWAS_CATALOGPMID:32778093

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1350295DOCK4dedicator of cytokinesis 47111726110112206399Human


Peak: (rs17159180)
Human AssemblyChrPosition (strand)Source
GRCh387112,036,530 - 112,036,531RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597099958GWAS1196032_Hprotein measurement QTL GWAS1196032 (human)7e-09protein measurement7112036530112036531Human
597100532GWAS1196606_Hprotein measurement QTL GWAS1196606 (human)2e-09protein measurement7112036530112036531Human
597228062GWAS1324136_Hprotein measurement QTL GWAS1324136 (human)6e-09protein measurement7112036530112036531Human
597099774GWAS1195848_Hprotein measurement QTL GWAS1195848 (human)1e-08protein measurement7112036530112036531Human
597206374GWAS1302448_Hprotein measurement QTL GWAS1302448 (human)2e-08protein measurement7112036530112036531Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1196032_H GCST011427 Protein quantitative trait loci (liver) 172 European ancestry individuals, 29 Black individuals, 86 individuals C 0.02962 7E-9 8.155 rs17159180 0.3868 protein measurement (EFO:0004747)
 PMID:32778093
GWAS1195848_H GCST011427 Protein quantitative trait loci (liver) 172 European ancestry individuals, 29 Black individuals, 86 individuals C 0.02962 1E-8 8 rs17159180 3.036 protein measurement (EFO:0004747)
 PMID:32778093
GWAS1196606_H GCST011427 Protein quantitative trait loci (liver) 172 European ancestry individuals, 29 Black individuals, 86 individuals C 0.02962 2E-9 8.699 rs17159180 0.3638 protein measurement (EFO:0004747)
 PMID:32778093
None Available GCST011427 Protein quantitative trait loci (liver) 172 European ancestry individuals, 29 Black individuals, 86 individuals C 0.02962 1E-8 8 rs17159180 1.8 protein measurement (EFO:0004747)
 PMID:32778093
GWAS1302448_H GCST011427 Protein quantitative trait loci (liver) 172 European ancestry individuals, 29 Black individuals, 86 individuals C 0.02962 2E-8 7.699 rs17159180 0.06418 protein measurement (EFO:0004747)
 PMID:32778093
None Available GCST011427 Protein quantitative trait loci (liver) 172 European ancestry individuals, 29 Black individuals, 86 individuals C 0.02962 2E-8 7.699 rs17159180 0.03556 protein measurement (EFO:0004747)
 PMID:32778093
GWAS1324136_H GCST011427 Protein quantitative trait loci (liver) 172 European ancestry individuals, 29 Black individuals, 86 individuals C 0.02962 6E-9 8.222 rs17159180 0.1337 protein measurement (EFO:0004747)
 PMID:32778093
Database
Acc Id
Source(s)
GWAS Catalog GCST011427 GWAS Catalog

Note Type Note Reference