GWAS1171531_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1171531_H (heel bone mineral density QTL GWAS1171531 (human)) Homo sapiens

Symbol: GWAS1171531_H
Name: heel bone mineral density QTL GWAS1171531 (human)
RGD ID: 597075457
Trait: heel bone mineral density
Measurement Type: bone mineral density   (CMO:0001226)    
LOD Score: Not Available
P Value: 4.0E-43
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381813,722,309 - 13,722,310RGD_MAPPER_PIPELINEGRCh38
GRCh371813,722,308 - 13,722,309RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1171531_HHumanbone mineral density  IAGPrs1941749405850206 GWAS_CATALOGPMID:28869591

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1171531_HHumanheel bone mineral density  IAGPrs1941749405850206 GWAS_CATALOGPMID:28869591

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1352066FAM210Afamily with sequence similarity 210 member A181366334713726558Human


Peak: (rs1941749)
Human AssemblyChrPosition (strand)Source
GRCh381813,722,309 - 13,722,310RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597075668GWAS1171742_Hheel bone mineral density QTL GWAS1171742 (human)2e-24heel bone mineral densitybone mineral density (CMO:0001226)181372230913722310Human
597075457GWAS1171531_Hheel bone mineral density QTL GWAS1171531 (human)4e-43heel bone mineral densitybone mineral density (CMO:0001226)181372230913722310Human
597076190GWAS1172264_Hheel bone mineral density QTL GWAS1172264 (human)6e-18heel bone mineral densitybone mineral density (CMO:0001226)181372230913722310Human
597227287GWAS1323361_Hheel bone mineral density QTL GWAS1323361 (human)4e-140heel bone mineral densitybone mineral density (CMO:0001226)181372230913722310Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1171531_H GCST006288 Heel bone mineral density 76,067 European ancestry women, 66,420 European ancestry men A 0.64084 4E-43 42.398 rs1941749 0.0480688 heel bone mineral density (EFO:0009270)
 PMID:28869591
GWAS1171742_H GCST006288 Heel bone mineral density 76,067 European ancestry women, 66,420 European ancestry men A 0.640463 2E-24 23.699 rs1941749 0.048728 heel bone mineral density (EFO:0009270)
 PMID:28869591
GWAS1172264_H GCST006288 Heel bone mineral density 76,067 European ancestry women, 66,420 European ancestry men A 0.641273 6E-18 17.222 rs1941749 0.0462445 heel bone mineral density (EFO:0009270)
 PMID:28869591
GWAS1323361_H GCST006433 Heel bone mineral density 394,929 European ancestry individuals ? NR 4E-140 139.398 rs1941749 0.0526636 heel bone mineral density (EFO:0009270)
 PMID:30048462
Database
Acc Id
Source(s)
GWAS Catalog GCST006288 GWAS Catalog

Note Type Note Reference