GWAS1169555_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1169555_H (cartilage thickness measurement QTL GWAS1169555 (human)) Homo sapiens

Symbol: GWAS1169555_H
Name: cartilage thickness measurement QTL GWAS1169555 (human)
RGD ID: 597073481
Trait: cartilage morphology trait   (VT:0000163)    
LOD Score: Not Available
P Value: 1.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3841,702,815 - 1,702,816RGD_MAPPER_PIPELINEGRCh38
GRCh3741,704,542 - 1,704,543RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1169555_HHumancartilage morphology trait  IAGPrs2236995405850206 GWAS_CATALOGPMID:27701424

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1169555_HHumancartilage thickness measurement  IAGPrs2236995405850206 GWAS_CATALOGPMID:27701424

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1350910SLBPstem-loop histone mRNA binding protein416927311712319Human


Peak: (rs2236995)
Human AssemblyChrPosition (strand)Source
GRCh3841,702,815 - 1,702,816RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597146051GWAS1242125_Hsevere acute respiratory syndrome, COVID-19 QTL GWAS1242125 (human)0.0000008severe acute respiratory syndrome, COVID-19417028151702816Human
597073481GWAS1169555_Hcartilage thickness measurement QTL GWAS1169555 (human)0.000001cartilage morphology trait (VT:0000163)417028151702816Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1169555_H GCST003853 Hip minimal joint space width 6,523 European ancestry individuals, 6,490 individuals T 0.49 0.000001 6 rs2236995 0.049 cartilage thickness measurement (EFO:0007873)
 PMID:27701424
GWAS1242125_H GCST90255357 Severe COVID-19 infection 235 severe cases, up to 841 resistant, benign or mild controls ? NR 8E-7 6.097 rs2236995 N/A severe acute respiratory syndrome (EFO:0000694)
 PMID:36662838
Database
Acc Id
Source(s)
GWAS Catalog GCST003853 GWAS Catalog

Note Type Note Reference