GWAS1164204_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1164204_H (peripheral arterial disease, traffic air pollution measurement QTL GWAS1164204 (human)) Homo sapiens

Symbol: GWAS1164204_H
Name: peripheral arterial disease, traffic air pollution measurement QTL GWAS1164204 (human)
RGD ID: 597068130
Trait: peripheral arterial disease, traffic air pollution measurement
LOD Score: Not Available
P Value: 3.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38107,834,867 - 7,834,868RGD_MAPPER_PIPELINEGRCh38
GRCh37107,876,830 - 7,876,831RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1164204_HHumanperipheral artery disease  IAGPrs10508336405850206 GWAS_CATALOGPMID:27082954

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1164204_HHumanPeripheral arterial stenosis  IAGPrs10508336405850206 GWAS_CATALOGPMID:27082954
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1164204_HHumanperipheral arterial disease  IAGPrs10508336405850206 GWAS_CATALOGPMID:27082954
GWAS1164204_HHumantraffic air pollution measurement  IAGPrs10508336405850206 GWAS_CATALOGPMID:27082954

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1323524TAF3TATA-box binding protein associated factor 31078185058016631Human


Peak: (rs10508336)
Human AssemblyChrPosition (strand)Source
GRCh38107,834,867 - 7,834,868RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597068130GWAS1164204_Hperipheral arterial disease, traffic air pollution measurement QTL GWAS1164204 (human)0.000003peripheral arterial disease, traffic air pollution measurement1078348677834868Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1164204_H GCST004482 Peripheral arterial disease (traffic-related air pollution interaction) 104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls ? NR 0.000003 5.523 rs10508336 49.17 peripheral arterial disease (EFO:0004265)
traffic air pollution measurement (EFO:0007908)
 PMID:27082954
Database
Acc Id
Source(s)
GWAS Catalog GCST004482 GWAS Catalog

Note Type Note Reference