GWAS1163664_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1163664_H (basophil count QTL GWAS1163664 (human)) Homo sapiens

Symbol: GWAS1163664_H
Name: basophil count QTL GWAS1163664 (human)
RGD ID: 597067590
Trait: basophil quantity   (VT:0002607)    
Measurement Type: blood basophil count   (CMO:0000034)    
blood granulocyte count   (CMO:0000111)    
LOD Score: Not Available
P Value: 2.0E-16
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381190,142,269 - 90,142,270RGD_MAPPER_PIPELINEGRCh38
GRCh371189,875,437 - 89,875,438RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1163664_HHumanblood basophil count  IAGPrs11018874405850206 GWAS_CATALOGPMID:29403010
GWAS1163664_HHumanblood granulocyte count  IAGPrs11018874405850206 GWAS_CATALOGPMID:29403010

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1163664_HHumanbasophil quantity  IAGPrs11018874405850206 GWAS_CATALOGPMID:29403010

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1163664_HHumanbasophil count  IAGPrs11018874405850206 GWAS_CATALOGPMID:29403010

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1314164NAALAD2N-acetylated alpha-linked acidic dipeptidase 2119013169990192894Human


Peak: (rs11018874)
Human AssemblyChrPosition (strand)Source
GRCh381190,142,269 - 90,142,270RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597067590GWAS1163664_Hbasophil count QTL GWAS1163664 (human)2e-16basophil quantity (VT:0002607)blood basophil count (CMO:0000034)119014226990142270Human
407027550GWAS676526_Hbasophil count QTL GWAS676526 (human)2e-09basophil quantity (VT:0002607)blood granulocyte count (CMO:0000111)119014226990142270Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1163664_H GCST005976 White blood cell count (basophil) 62,076 Japanese ancestry individuals ? NR 2E-16 15.699 rs11018874 0.05505 basophil count (EFO:0005090)
 PMID:29403010
GWAS676526_H GCST001134 White blood cell types 8,794 Japanese ancestry individuals G 0.69 2E-9 8.699 rs11018874 0.077 basophil count (EFO:0005090)
 PMID:21738478
Database
Acc Id
Source(s)
GWAS Catalog GCST005976 GWAS Catalog

Note Type Note Reference