GWAS1163326_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1163326_H (systolic blood pressure QTL GWAS1163326 (human)) Homo sapiens

Symbol: GWAS1163326_H
Name: systolic blood pressure QTL GWAS1163326 (human)
RGD ID: 597067252
Trait: systolic blood pressure
Measurement Type: systolic blood pressure   (CMO:0000004)    
LOD Score: Not Available
P Value: 8.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh383150,410,605 - 150,410,606RGD_MAPPER_PIPELINEGRCh38
GRCh373150,128,392 - 150,128,393RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1163326_HHumansystolic blood pressure  IAGPrs879634405850206 GWAS_CATALOGPMID:27618447

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1163326_HHumansystolic blood pressure  IAGPrs879634405850206 GWAS_CATALOGPMID:27618447

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1602336TSC22D2TSC22 domain family member 23150408298150466422Human
155650994LOC127398970H3K27ac hESC enhancer GRCh37_chr3:150127902-1501287813150410089150410994Human


Peak: (rs879634)
Human AssemblyChrPosition (strand)Source
GRCh383150,410,605 - 150,410,606RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597067252GWAS1163326_Hsystolic blood pressure QTL GWAS1163326 (human)0.000008systolic blood pressuresystolic blood pressure (CMO:0000004)3150410605150410606Human
1300026BP36_HBlood pressure QTL 36 (human)4.04Blood pressurehypertension susceptibility3135720453161720453Human
1298415BP24_HBlood pressure QTL 24 (human)2.9Blood pressurehypertension susceptibility3135720453161720453Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1163326_H GCST006021 Systolic blood pressure up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals A 0.2578 0.000008 5.097 rs879634 0.289 systolic blood pressure (EFO:0006335)
 PMID:27618447
GWAS1703486_H GCST90002349 Mean platelet volume 484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals G 0.729438 5E-14 13.302 rs879634 N/A platelet volume (OBA:0003277)
 PMID:32888493
Database
Acc Id
Source(s)
GWAS Catalog GCST006021 GWAS Catalog

Note Type Note Reference