GWAS1159175_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1159175_H (total cholesterol measurement QTL GWAS1159175 (human)) Homo sapiens

Symbol: GWAS1159175_H
Name: total cholesterol measurement QTL GWAS1159175 (human)
RGD ID: 597063101
Trait: total cholesterol measurement
Measurement Type: blood total cholesterol level   (CMO:0000051)    
LOD Score: Not Available
P Value: 6.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh383132,444,356 - 132,444,357RGD_MAPPER_PIPELINEGRCh38
GRCh373132,163,200 - 132,163,201RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1159175_HHumanblood total cholesterol level  IAGPrs17404153405850206 GWAS_CATALOGPMID:29507422

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1159175_HHumantotal cholesterol measurement  IAGPrs17404153405850206 GWAS_CATALOGPMID:29507422

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1317589DNAJC13DnaJ heat shock protein family (Hsp40) member C133132417502132539032Human


Peak: (rs17404153)
Human AssemblyChrPosition (strand)Source
GRCh383132,444,356 - 132,444,357RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
407048195GWAS697171_Hlow density lipoprotein cholesterol measurement QTL GWAS697171 (human)2e-09low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)3132444356132444357Human
597063102GWAS1159176_Htotal cholesterol measurement QTL GWAS1159176 (human)0.0000005total cholesterol measurementblood total cholesterol level (CMO:0000051)3132444356132444357Human
597063101GWAS1159175_Htotal cholesterol measurement QTL GWAS1159175 (human)0.0000006total cholesterol measurementblood total cholesterol level (CMO:0000051)3132444356132444357Human
597024633GWAS1120707_Hlow density lipoprotein cholesterol measurement QTL GWAS1120707 (human)0.0000003low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)3132444356132444357Human
407051404GWAS700380_Hhigh density lipoprotein cholesterol measurement QTL GWAS700380 (human)5e-09high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)3132444356132444357Human
597024634GWAS1120708_Hlow density lipoprotein cholesterol measurement QTL GWAS1120708 (human)6e-08low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)3132444356132444357Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1159175_H GCST007143 Total cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals G 0.878 6E-7 6.222 rs17404153 0.035 total cholesterol measurement (EFO:0004574)
 PMID:29507422
GWAS1120707_H GCST007141 Low density lipoprotein cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals G 0.878 3E-7 6.523 rs17404153 0.037 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:29507422
GWAS1120708_H GCST007141 Low density lipoprotein cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals G NR 6E-8 7.222 rs17404153 0.035 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:29507422
GWAS1159176_H GCST007143 Total cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals G NR 5E-7 6.302 rs17404153 0.032 total cholesterol measurement (EFO:0004574)
 PMID:29507422
GWAS697171_H GCST002222 LDL cholesterol 94,595 European ancestry individuals T 0.14 2E-9 8.699 rs17404153 0.034 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:24097068
GWAS700380_H GCST002223 HDL cholesterol 94,595 European ancestry individuals T 0.14 5E-9 8.302 rs17404153 0.028 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:24097068
Database
Acc Id
Source(s)
GWAS Catalog GCST007143 GWAS Catalog

Note Type Note Reference