GWAS1150699_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1150699_H (multiple sclerosis QTL GWAS1150699 (human)) Homo sapiens

Symbol: GWAS1150699_H
Name: multiple sclerosis QTL GWAS1150699 (human)
RGD ID: 597054625
Trait: multiple sclerosis
LOD Score: Not Available
P Value: 9.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381242,460,403 - 42,460,404RGD_MAPPER_PIPELINEGRCh38
GRCh371242,854,205 - 42,854,206RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1150699_HHumanmultiple sclerosis  IAGPrs3747562405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:31604244


#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1346789PRICKLE1prickle planar cell polarity protein 1124245675742589746Human


Peak: (rs3747562)
Human AssemblyChrPosition (strand)Source
GRCh381242,460,403 - 42,460,404RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597054625GWAS1150699_Hmultiple sclerosis QTL GWAS1150699 (human)0.000009multiple sclerosis124246040342460404Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1150699_H GCST009597 Multiple sclerosis 14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls G NR 0.000009 5.046 rs3747562 1.0571942 PMID:31604244
Database
Acc Id
Source(s)
GWAS Catalog GCST009597 GWAS Catalog

Note Type Note Reference