GWAS1133788_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1133788_H (body mass index QTL GWAS1133788 (human)) Homo sapiens

Symbol: GWAS1133788_H
Name: body mass index QTL GWAS1133788 (human)
RGD ID: 597037714
Trait: body mass index
Measurement Type: body mass index (BMI)   (CMO:0000105)    
LOD Score: Not Available
P Value: 1.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381949,142,749 - 49,142,750RGD_MAPPER_PIPELINEGRCh38
GRCh371949,646,006 - 49,646,007RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1133788_HHumanbody mass index (BMI)  IAGPrs4545921405850206 GWAS_CATALOGPMID:30595370

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1133788_HHumanbody mass index  IAGPrs4545921405850206 GWAS_CATALOGPMID:30595370

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1312318PPFIA3PTPRF interacting protein alpha 3194911954449151026Human


Peak: (rs4545921)
Human AssemblyChrPosition (strand)Source
GRCh381949,142,749 - 49,142,750RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1559110SCL22_HSerum cholesterol level QTL 22 (human)3.590.000241Lipid levelLDL cholesterol193190759457907594Human
597144630GWAS1240704_Hbody mass index QTL GWAS1240704 (human)2e-09body mass indexbody mass index (BMI) (CMO:0000105)194914274949142750Human
597037714GWAS1133788_Hbody mass index QTL GWAS1133788 (human)1e-10body mass indexbody mass index (BMI) (CMO:0000105)194914274949142750Human
597326716GWAS1422790_Hbody mass index QTL GWAS1422790 (human)7e-10body mass indexbody mass index (BMI) (CMO:0000105)194914274949142750Human
1331657COPD9_HChronic obstructive pulmonary disease QTL 9 (human)1.94Chronic airflow obstructionpost-bronchodilator FEV1193102176057021760Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1133788_H GCST007039 Body mass index approximately 458,000 European ancestry individuals ? NR 1E-10 10 rs4545921 N/A body mass index (EFO:0004340)
 PMID:30595370
GWAS1240704_H GCST90179150 Body mass index (MTAG) 694,649 European ancestry individuals A NR 2E-9 8.699 rs4545921 0.012591 body mass index (EFO:0004340)
 PMID:36376304
GWAS1744809_H GCST010988 Adult body size 453,169 European ancestry individuals A 0.399961 4E-8 7.398 rs4545921 0.00769113 body height (OBA:VT0001253)
 PMID:32376654
GWAS1422790_H GCST90301650 Body mass index 441,761 European ancestry individuals A NR 7E-10 9.155 rs4545921 0.0120706 body mass index (EFO:0004340)
 PMID:37280435
Database
Acc Id
Source(s)
GWAS Catalog GCST007039 GWAS Catalog

Note Type Note Reference