GWAS1131122_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1131122_H (heel bone mineral density QTL GWAS1131122 (human)) Homo sapiens

Symbol: GWAS1131122_H
Name: heel bone mineral density QTL GWAS1131122 (human)
RGD ID: 597035048
Trait: heel bone mineral density
Measurement Type: bone mineral density   (CMO:0001226)    
LOD Score: Not Available
P Value: 6.0E-16
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38123,100,328 - 3,100,329RGD_MAPPER_PIPELINEGRCh38
GRCh37123,209,494 - 3,209,495RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1131122_HHumanbone mineral density  IAGPrs10744592405850206 GWAS_CATALOGPMID:30598549

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1131122_HHumanheel bone mineral density  IAGPrs10744592405850206 GWAS_CATALOGPMID:30598549

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1602896TSPAN9tetraspanin 91230773793286559Human


Peak: (rs10744592)
Human AssemblyChrPosition (strand)Source
GRCh38123,100,328 - 3,100,329RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597035048GWAS1131122_Hheel bone mineral density QTL GWAS1131122 (human)6e-16heel bone mineral densitybone mineral density (CMO:0001226)1231003283100329Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1131122_H GCST006979 Heel bone mineral density 426,824 British ancestry individuals C 0.4128 6E-16 15.222 rs10744592 0.0151563 heel bone mineral density (EFO:0009270)
 PMID:30598549
Database
Acc Id
Source(s)
GWAS Catalog GCST006979 GWAS Catalog

Note Type Note Reference