GWAS1126299_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1126299_H (lysophosphatidylcholine measurement QTL GWAS1126299 (human)) Homo sapiens

Symbol: GWAS1126299_H
Name: lysophosphatidylcholine measurement QTL GWAS1126299 (human)
RGD ID: 597030225
Trait: lysophosphatidylcholine measurement
Measurement Type: blood phospholipid level   (CMO:0001169)    
LOD Score: Not Available
P Value: 3.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381679,529,679 - 79,529,680RGD_MAPPER_PIPELINEGRCh38
GRCh371679,563,576 - 79,563,577RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1126299_HHumanblood phospholipid level  IAGPrs35221977405850206 GWAS_CATALOGPMID:31551469

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1126299_HHumanlysophosphatidylcholine measurement  IAGPrs35221977405850206 GWAS_CATALOGPMID:31551469

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
731331MAFMAF bZIP transcription factor167920262279600737Human


Peak: (rs35221977)
Human AssemblyChrPosition (strand)Source
GRCh381679,529,679 - 79,529,680RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597030225GWAS1126299_Hlysophosphatidylcholine measurement QTL GWAS1126299 (human)3e-08lysophosphatidylcholine measurementblood phospholipid level (CMO:0001169)167952967979529680Human
597030227GWAS1126301_Hlysophosphatidylcholine measurement QTL GWAS1126301 (human)2e-08lysophosphatidylcholine measurementblood phospholipid level (CMO:0001169)167952967979529680Human
597030223GWAS1126297_Hlysophosphatidylcholine measurement QTL GWAS1126297 (human)1e-09lysophosphatidylcholine measurementblood phospholipid level (CMO:0001169)167952967979529680Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1126299_H GCST008925 Lysophosphatidylcholine levels 2,045 European ancestry individuals C NR 3E-8 7.523 rs35221977 0.4228 lysophosphatidylcholine measurement (EFO:0010224)
 PMID:31551469
GWAS1126297_H GCST008925 Lysophosphatidylcholine levels 2,045 European ancestry individuals C NR 1E-9 9 rs35221977 0.4583 lysophosphatidylcholine measurement (EFO:0010224)
 PMID:31551469
GWAS1126301_H GCST008925 Lysophosphatidylcholine levels 2,045 European ancestry individuals C NR 2E-8 7.699 rs35221977 0.4222 lysophosphatidylcholine measurement (EFO:0010224)
 PMID:31551469
Database
Acc Id
Source(s)
GWAS Catalog GCST008925 GWAS Catalog

Note Type Note Reference