GWAS1087497_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1087497_H (cortical thickness QTL GWAS1087497 (human)) Homo sapiens

Symbol: GWAS1087497_H
Name: cortical thickness QTL GWAS1087497 (human)
RGD ID: 596967978
Trait: cortical thickness
LOD Score: Not Available
P Value: 6.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38826,331,707 - 26,331,708RGD_MAPPER_PIPELINEGRCh38
GRCh37826,189,223 - 26,189,224RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
733714PPP2R2Aprotein phosphatase 2 regulatory subunit Balpha82629150826372680Human


Peak: (rs77690628)
Human AssemblyChrPosition (strand)Source
GRCh38826,331,707 - 26,331,708RGD_MAPPER_PIPELINE


1 to 10 of 23 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298482BP2_HBlood pressure QTL 2 (human)1.8Blood pressurediastolic8695325632953256Human
596967734GWAS1087253_Hcortical thickness QTL GWAS1087253 (human)7e-12cortical thickness82633170726331708Human
596967729GWAS1087248_Hcortical thickness QTL GWAS1087248 (human)4e-11cortical thickness82633170726331708Human
597265340GWAS1361414_Hcortical thickness QTL GWAS1361414 (human)6e-13cortical thickness82633170726331708Human
597266750GWAS1362824_Hcortical thickness QTL GWAS1362824 (human)1e-09cortical thickness82633170726331708Human
597267221GWAS1363295_Hcortical thickness QTL GWAS1363295 (human)3e-09cortical thickness82633170726331708Human
596967544GWAS1087063_Hcortical thickness QTL GWAS1087063 (human)1e-09cortical thickness82633170726331708Human
597264052GWAS1360126_Hcortical thickness QTL GWAS1360126 (human)4e-11cortical thickness82633170726331708Human
596967194GWAS1086713_Hcortical thickness QTL GWAS1086713 (human)2e-08cortical thickness82633170726331708Human
596967354GWAS1086873_Hcortical thickness QTL GWAS1086873 (human)2e-09cortical thickness82633170726331708Human

1 to 10 of 23 rows


1 to 12 of 12 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1289067_H GCST90271811 Temporal pole thickness (unadjusted for global measures) 32,488 European ancestry individuals ? NR 1E-13 13 rs77690628 0.0995 cortical thickness (EFO:0004840)
 PMID:36893272
GWAS1290762_H GCST90271815 Cortical thickness 32,488 European ancestry individuals ? NR 7E-15 14.155 rs77690628 0.1041 cortical thickness (EFO:0004840)
 PMID:36893272
GWAS1291094_H GCST90271806 Middle temporal thickness (unadjusted for global measures) 32,488 European ancestry individuals ? NR 6E-14 13.222 rs77690628 0.1005 cortical thickness (EFO:0004840)
 PMID:36893272
GWAS1360126_H GCST90399906 Regional cortical thickness (superiortemporal) 34,574 European ancestry individuals A NR 4E-11 10.398 rs77690628 N/A cortical thickness (EFO:0004840)
 PMID:38890310
GWAS1360338_H GCST90399908 Regional cortical thickness (supramarginal) 34,531 European ancestry individuals A NR 7E-12 11.155 rs77690628 N/A cortical thickness (EFO:0004840)
 PMID:38890310
GWAS1361414_H GCST90399875 Global cortical thickness (GlobalMeanMean) 34,552 European ancestry individuals A NR 6E-13 12.222 rs77690628 N/A cortical thickness (EFO:0004840)
 PMID:38890310
GWAS1361432_H GCST90399903 Regional cortical thickness (rostralmiddlefrontal) 34,542 European ancestry individuals A NR 3E-8 7.523 rs77690628 N/A cortical thickness (EFO:0004840)
 PMID:38890310
GWAS1362157_H GCST90399904 Regional cortical thickness (superiorfrontal) 34,544 European ancestry individuals A NR 5E-9 8.302 rs77690628 N/A cortical thickness (EFO:0004840)
 PMID:38890310
GWAS1362584_H GCST90399892 Regional cortical thickness (parsopercularis) 34,538 European ancestry individuals A NR 2E-9 8.699 rs77690628 N/A cortical thickness (EFO:0004840)
 PMID:38890310
GWAS1362824_H GCST90399896 Regional cortical thickness (parstriangularis) 34,553 European ancestry individuals A NR 1E-9 9 rs77690628 N/A cortical thickness (EFO:0004840)
 PMID:38890310
GWAS1362838_H GCST90399889 Regional cortical thickness (middletemporal) 34,574 European ancestry individuals A NR 2E-8 7.699 rs77690628 N/A cortical thickness (EFO:0004840)
 PMID:38890310
GWAS1363295_H GCST90399891 Regional cortical thickness (paracentral) 34,569 European ancestry individuals A NR 3E-9 8.523 rs77690628 N/A cortical thickness (EFO:0004840)
 PMID:38890310
1 to 12 of 12 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90399875 GWAS Catalog

Note Type Note Reference