GWAS1084596_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1084596_H (diet measurement, testosterone measurement QTL GWAS1084596 (human)) Homo sapiens

Symbol: GWAS1084596_H
Name: diet measurement, testosterone measurement QTL GWAS1084596 (human)
RGD ID: 596965077
Trait: diet measurement, testosterone measurement
LOD Score: Not Available
P Value: 3.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381679,341,254 - 79,341,255RGD_MAPPER_PIPELINEGRCh38
GRCh371679,375,151 - 79,375,152RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
731331MAFMAF bZIP transcription factor167920262279600737Human


Peak: (rs1553722)
Human AssemblyChrPosition (strand)Source
GRCh381679,341,254 - 79,341,255RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597155079GWAS1251153_Hdiet measurement, testosterone measurement QTL GWAS1251153 (human)0.000002eating behavior trait (VT:0001431)serum testosterone level (CMO:0000568)167934125479341255Human
596965077GWAS1084596_Hdiet measurement, testosterone measurement QTL GWAS1084596 (human)0.000003diet measurement, testosterone measurement167934125479341255Human
597151821GWAS1247895_Hdiet measurement, testosterone measurement QTL GWAS1247895 (human)0.000003eating behavior trait (VT:0001431)serum testosterone level (CMO:0000568)167934125479341255Human
596965071GWAS1084590_Hdiet measurement, testosterone measurement QTL GWAS1084590 (human)0.000002diet measurement, testosterone measurement167934125479341255Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1247895_H GCST90161224 Testosterone levels (adjusted for BMI) x vegetarianism interaction 130,245 European ancestry individuals G 0.947508 0.000003 5.523 rs1553722 0.213904 diet measurement (EFO:0008111)
testosterone measurement (EFO:0004908)
 PMID:38990837
GWAS1251153_H GCST90161194 Testosterone levels x vegetarianism interaction 130,550 European ancestry individuals G 0.947493 0.000002 5.699 rs1553722 0.219255 diet measurement (EFO:0008111)
testosterone measurement (EFO:0004908)
 PMID:38990837
Database
Acc Id
Source(s)
GWAS Catalog GCST90161224 GWAS Catalog

Note Type Note Reference