GWAS1079378_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1079378_H (glomerular filtration rate QTL GWAS1079378 (human)) Homo sapiens

Symbol: GWAS1079378_H
Name: glomerular filtration rate QTL GWAS1079378 (human)
RGD ID: 596959859
Trait: glomerular filtration rate
LOD Score: Not Available
P Value: 2.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh383132,465,147 - 132,465,148RGD_MAPPER_PIPELINEGRCh38
GRCh373132,183,991 - 132,183,992RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1317589DNAJC13DnaJ heat shock protein family (Hsp40) member C133132417502132539032Human


Peak: (rs74341202)
Human AssemblyChrPosition (strand)Source
GRCh383132,465,147 - 132,465,148RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
596959859GWAS1079378_Hglomerular filtration rate QTL GWAS1079378 (human)2e-10glomerular filtration rate3132465147132465148Human
597258542GWAS1354616_Htotal cholesterol measurement QTL GWAS1354616 (human)4e-42total cholesterol measurementblood total cholesterol level (CMO:0000051)3132465147132465148Human
597273662GWAS1369736_Hlow density lipoprotein cholesterol measurement QTL GWAS1369736 (human)4e-30low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)3132465147132465148Human
597266243GWAS1362317_Hlow density lipoprotein cholesterol measurement QTL GWAS1362317 (human)4e-36low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)3132465147132465148Human
596959595GWAS1079114_Hglomerular filtration rate QTL GWAS1079114 (human)3e-12glomerular filtration rate3132465147132465148Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1354616_H GCST90239673 Total cholesterol levels 40,963 South Asian ancestry individuals, 48,057 Hispanic individuals, 99,432 Admixed African or African ancestry individuals, 146,492 East Asian ancestry individuals, 1,320,016 European ancestry individuals ? NR 4E-42 41.398 rs74341202 N/A total cholesterol measurement (EFO:0004574)
 PMID:34887591
GWAS1362317_H GCST90239655 Low density lipoprotein cholesterol levels 40,963 South Asian ancestry individuals, 48,057 Hispanic individuals, 99,432 Admixed African or African ancestry individuals, 146,492 East Asian ancestry individuals, 1,320,016 European ancestry individuals ? NR 4E-36 35.398 rs74341202 N/A low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34887591
GWAS1369736_H GCST90239658 Low density lipoprotein cholesterol levels 1,320,016 European ancestry individuals A 0.0496846 4E-30 29.398 rs74341202 0.0425579 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34887591
GWAS1806768_H GCST90428446 Estimated glomerular filtration rate (creatinine, cystatin c) 406,504 European ancestry individuals A NR 2E-10 9.699 rs74341202 0.028703 glomerular filtration rate (OBA:0003747)
 PMID:39256582
GWAS1807410_H GCST90428447 Estimated glomerular filtration rate (creatinine) 406,504 European ancestry individuals A NR 3E-12 11.523 rs74341202 0.0319386 glomerular filtration rate (OBA:0003747)
 PMID:39256582
Database
Acc Id
Source(s)
GWAS Catalog GCST90428446 GWAS Catalog

Note Type Note Reference