GWAS1065693_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1065693_H (systolic blood pressure QTL GWAS1065693 (human)) Homo sapiens

Symbol: GWAS1065693_H
Name: systolic blood pressure QTL GWAS1065693 (human)
RGD ID: 407416717
Trait: systolic blood pressure
Measurement Type: systolic blood pressure   (CMO:0000004)    
LOD Score: Not Available
P Value: 4.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386169,320,142 - 169,320,143RGD_MAPPER_PIPELINEGRCh38
GRCh376169,720,237 - 169,720,238RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1065693_HHumansystolic blood pressure  IAGPrs9294987405850206Based on the EFO term IDGWAS_CATALOGPMID:38689001

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1065693_HHumansystolic blood pressure  IAGPrs9294987405850206 GWAS_CATALOGPMID:38689001
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs9294987)
Human AssemblyChrPosition (strand)Source
GRCh386169,320,142 - 169,320,143RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407416954GWAS1065930_Hpulse pressure measurement QTL GWAS1065930 (human)1e-21pulse pressure measurementpulse pressure (CMO:0000292)6169320142169320143Human
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
407416717GWAS1065693_Hsystolic blood pressure QTL GWAS1065693 (human)4e-12systolic blood pressuresystolic blood pressure (CMO:0000004)6169320142169320143Human
407399410GWAS1048386_Hsystolic blood pressure QTL GWAS1048386 (human)2e-11systolic blood pressuresystolic blood pressure (CMO:0000004)6169320142169320143Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1048386_H GCST90018972 Systolic blood pressure 340,159 European ancestry individuals, 145,505 East Asian ancestry individuals C NR 2E-11 10.699 rs9294987 0.0148 systolic blood pressure (EFO:0006335)
 PMID:34594039
GWAS1065693_H GCST90310294 Systolic blood pressure 1,028,980 European ancestry individuals C NR 4E-12 11.398 rs9294987 0.1705 systolic blood pressure (EFO:0006335)
 PMID:38689001
GWAS1065930_H GCST90310296 Pulse pressure 1,028,980 European ancestry individuals C NR 1E-21 21 rs9294987 0.1678 pulse pressure measurement (EFO:0005763)
 PMID:38689001
Database Acc Id Source(s)
GWAS Catalog GCST90310294 GWAS Catalog

RGD Curation Notes
Note Type Note Reference