GWAS1052704_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1052704_H (type 1 diabetes mellitus QTL GWAS1052704 (human)) Homo sapiens

Symbol: GWAS1052704_H
Name: type 1 diabetes mellitus QTL GWAS1052704 (human)
RGD ID: 407403728
Trait: type 1 diabetes mellitus
LOD Score: Not Available
P Value: 6.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3835,093,886 - 5,093,887RGD_MAPPER_PIPELINEGRCh38
GRCh3735,135,571 - 5,135,572RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1052704_HHumantype 1 diabetes mellitus  IAGPrs3864055405850206 GWAS_CATALOGPMID:30552108
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs3864055)
Human AssemblyChrPosition (strand)Source
GRCh3835,093,886 - 5,093,887RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407403728GWAS1052704_Htype 1 diabetes mellitus QTL GWAS1052704 (human)0.000006type 1 diabetes mellitus350938865093887Human
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1052704_H GCST007433 Fulminant type 1 diabetes 257 Japanese ancestry cases, 419 Japanese ancestry controls T NR 0.000006 5.222 rs3864055 1.79 PMID:30552108
Database Acc Id Source(s)
GWAS Catalog GCST007433 GWAS Catalog

RGD Curation Notes
Note Type Note Reference