GWAS1048953_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1048953_H (cysteine-rich with EGF-like domain protein 1 measurement QTL GWAS1048953 (human)) Homo sapiens

Symbol: GWAS1048953_H
Name: cysteine-rich with EGF-like domain protein 1 measurement QTL GWAS1048953 (human)
RGD ID: 407399977
Trait: cysteine-rich with EGF-like domain protein 1 measurement
LOD Score: Not Available
P Value: 5.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38313,438,653 - 13,438,654RGD_MAPPER_PIPELINEGRCh38
GRCh37313,480,153 - 13,480,154RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1048953_HHumancysteine-rich with EGF-like domain protein 1 measurement  IAGPrs58747930405850206 GWAS_CATALOGPMID:34814699
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs58747930)
Human AssemblyChrPosition (strand)Source
GRCh38313,438,653 - 13,438,654RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407399977GWAS1048953_Hcysteine-rich with EGF-like domain protein 1 measurement QTL GWAS1048953 (human)5e-12cysteine-rich with EGF-like domain protein 1 measurement31343865313438654Human
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1048953_H GCST90137870 Cysteine-rich with EGF-like domain protein 1 levels 1,852 African American or Afro-Caribbean individuals ? NR 5E-12 11.302 rs58747930 0.19 cysteine-rich with EGF-like domain protein 1 measurement (EFO:0021870)
 PMID:34814699
Database Acc Id Source(s)
GWAS Catalog GCST90137870 GWAS Catalog

RGD Curation Notes
Note Type Note Reference