GWAS1037003_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1037003_H (acute myeloid leukemia QTL GWAS1037003 (human)) Homo sapiens

Symbol: GWAS1037003_H
Name: acute myeloid leukemia QTL GWAS1037003 (human)
RGD ID: 407388027
Trait: acute myeloid leukemia
LOD Score: Not Available
P Value: 6.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386157,853,366 - 157,853,367RGD_MAPPER_PIPELINEGRCh38
GRCh376158,274,398 - 158,274,399RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1353452SNX9sorting nexin 96157823246157945077Human

Position Markers

Peak: (rs2803353)
Human AssemblyChrPosition (strand)Source
GRCh386157,853,366 - 157,853,367RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407388027GWAS1037003_Hacute myeloid leukemia QTL GWAS1037003 (human)6e-12acute myeloid leukemia6157853366157853367Human
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
407388130GWAS1037106_Hacute myeloid leukemia QTL GWAS1037106 (human)8e-12acute myeloid leukemia6157853366157853367Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1037003_H GCST008413 Core binding factor acute myeloid leukemia 175 European ancestry cases, 218 European ancestry controls A 0.464 6E-12 11.222 rs2803353 N/A acute myeloid leukemia (EFO:0000222)
 PMID:27903959
GWAS1037106_H GCST008413 Core binding factor acute myeloid leukemia 175 European ancestry cases, 218 European ancestry controls C 0.266 8E-12 11.097 rs2803353 N/A acute myeloid leukemia (EFO:0000222)
 PMID:27903959
Database Acc Id Source(s)
GWAS Catalog GCST008413 GWAS Catalog

RGD Curation Notes
Note Type Note Reference