GWAS1031509_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1031509_H (obsolete_red blood cell distribution width QTL GWAS1031509 (human)) Homo sapiens

Symbol: GWAS1031509_H
Name: obsolete_red blood cell distribution width QTL GWAS1031509 (human)
RGD ID: 407382533
Trait: obsolete_red blood cell distribution width
LOD Score: Not Available
P Value: 6.0E-23
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38536,156,680 - 36,156,681RGD_MAPPER_PIPELINEGRCh38
GRCh37536,156,782 - 36,156,783RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1607086SKP2S-phase kinase associated protein 253615211136193530Human


Peak: (rs3804446)
Human AssemblyChrPosition (strand)Source
GRCh38536,156,680 - 36,156,681RGD_MAPPER_PIPELINE


1 to 10 of 11 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
407389513GWAS1038489_Hobsolete_red blood cell distribution width QTL GWAS1038489 (human)3e-09obsolete_red blood cell distribution width53615668036156681Human
407386442GWAS1035418_Hobsolete_red blood cell distribution width QTL GWAS1035418 (human)6e-25obsolete_red blood cell distribution width53615668036156681Human
596953607GWAS1073126_HRed cell distribution width QTL GWAS1073126 (human)6e-23Red cell distribution width53615668036156681Human
597079505GWAS1175579_HRed cell distribution width QTL GWAS1175579 (human)6e-23Red cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)53615668036156681Human
597089006GWAS1185080_HRed cell distribution width QTL GWAS1185080 (human)6e-25Red cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)53615668036156681Human
596976412GWAS1095931_HRed cell distribution width QTL GWAS1095931 (human)2e-19Red cell distribution width53615668036156681Human
596949343GWAS1068862_HRed cell distribution width QTL GWAS1068862 (human)3e-09Red cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)53615668036156681Human
596950792GWAS1070311_HRed cell distribution width QTL GWAS1070311 (human)6e-25Red cell distribution width53615668036156681Human
407382533GWAS1031509_Hobsolete_red blood cell distribution width QTL GWAS1031509 (human)6e-23obsolete_red blood cell distribution width53615668036156681Human
597109162GWAS1205236_HRed cell distribution width QTL GWAS1205236 (human)2e-19Red cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)53615668036156681Human

1 to 10 of 11 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1068862_H GCST004621 Red cell distribution width 171,529 European ancestry individuals A 0.8753 3E-9 8.523 rs3804446 0.03183214 Red cell distribution width (EFO:0009188)
 PMID:27863252
GWAS1175579_H GCST90002372 Red cell distribution width 563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals G 0.145087 6E-23 22.222 rs3804446 N/A Red cell distribution width (EFO:0009188)
 PMID:32888493
GWAS1185080_H GCST90002369 Red cell distribution width 531,774 European ancestry individuals G 0.125995 6E-25 24.222 rs3804446 0.029228 Red cell distribution width (EFO:0009188)
 PMID:32888493
GWAS1205236_H GCST90002404 Red cell distribution width 408,112 British individuals A 0.874747 2E-19 18.699 rs3804446 0.030016784 Red cell distribution width (EFO:0009188)
 PMID:32888494
Database
Acc Id
Source(s)
GWAS Catalog GCST90002372 GWAS Catalog

Note Type Note Reference