GWAS1028466_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1028466_H (C-reactive protein measurement QTL GWAS1028466 (human)) Homo sapiens

Symbol: GWAS1028466_H
Name: C-reactive protein measurement QTL GWAS1028466 (human)
RGD ID: 407379490
Trait: C-reactive protein measurement
Measurement Type: blood C-reactive protein level   (CMO:0003160)    
LOD Score: Not Available
P Value: 1.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3839,470,052 - 9,470,053RGD_MAPPER_PIPELINEGRCh38
GRCh3739,511,736 - 9,511,737RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1028466_HHumanblood C-reactive protein level  IAGPrs3774063405850206Based on the EFO term IDGWAS_CATALOGPMID:31900758

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1028466_HHumanC-reactive protein measurement  IAGPrs3774063405850206 GWAS_CATALOGPMID:31900758
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1605381SETD5SET domain containing 5393976159478154Human

Position Markers

Peak: (rs3774063)
Human AssemblyChrPosition (strand)Source
GRCh3839,470,052 - 9,470,053RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human
407379490GWAS1028466_HC-reactive protein measurement QTL GWAS1028466 (human)1e-11C-reactive protein measurementblood C-reactive protein level (CMO:0003160)394700529470053Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
None Available GCST90428448 Estimated glomerular filtration rate (cystatin c) 406,504 European ancestry individuals T NR 4E-7 6.398 rs3774063 0.0171229 glomerular filtration rate (EFO:0005208)
 PMID:39256582
None Available GCST90428446 Estimated glomerular filtration rate (creatinine, cystatin c) 406,504 European ancestry individuals T NR 3E-9 8.523 rs3774063 0.020228 glomerular filtration rate (EFO:0005208)
 PMID:39256582
None Available GCST90428447 Estimated glomerular filtration rate (creatinine) 406,504 European ancestry individuals T NR 0.000004 5.398 rs3774063 0.0158746 glomerular filtration rate (EFO:0005208)
 PMID:39256582
GWAS1028466_H GCST009777 C-reactive protein levels 418,642 British ancestry individuals C 0.898541 1E-11 11 rs3774063 0.0229222 C-reactive protein measurement (EFO:0004458)
 PMID:31900758
Database Acc Id Source(s)
GWAS Catalog GCST009777 GWAS Catalog

RGD Curation Notes
Note Type Note Reference