GWAS1018562_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1018562_H (endometrial carcinoma QTL GWAS1018562 (human)) Homo sapiens

Symbol: GWAS1018562_H
Name: endometrial carcinoma QTL GWAS1018562 (human)
RGD ID: 407369586
Trait: endometrial carcinoma
LOD Score: Not Available
P Value: 5.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381373,240,754 - 73,240,755RGD_MAPPER_PIPELINEGRCh38
GRCh371373,814,891 - 73,814,892RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1018562_HHumanendometrial carcinoma  IAGPrs11841589405850206Based on the EFO term IDGWAS_CATALOGPMID:27135401

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1018562_HHumanEndometrial carcinoma  IAGPrs11841589405850206Based on the EFO term IDGWAS_CATALOGPMID:27135401
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1018562_HHumanendometrial carcinoma  IAGPrs11841589405850206 GWAS_CATALOGPMID:27135401

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs11841589)
Human AssemblyChrPosition (strand)Source
GRCh381373,240,754 - 73,240,755RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
407369586GWAS1018562_Hendometrial carcinoma QTL GWAS1018562 (human)5e-11endometrial carcinoma137324075473240755Human
407369585GWAS1018561_Hendometrial endometrioid carcinoma QTL GWAS1018561 (human)6e-10endometrial endometrioid carcinoma137324075473240755Human
2289192BW359_HBody weight QTL 359 (human)0.0344Body fat amountpercent fat134998940475989404Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1018562_H GCST003524 Endometrial cancer 2,082 European ancestry endometrioid cases, 130 European ancestry cases, 9,544 European ancestry controls G 0.74 5E-11 10.302 rs11841589 1.15 endometrial carcinoma (EFO:1001512)
 PMID:27135401
GWAS1018561_H GCST003525 Endometrial endometrioid carcinoma 2,082 European ancestry cases, 9,544 European ancestry controls G 0.74 6E-10 9.222 rs11841589 1.16 endometrial endometrioid carcinoma (EFO:1001514)
 PMID:27135401
Database
Acc Id
Source(s)
GWAS Catalog GCST003524 GWAS Catalog

Note Type Note Reference