GWAS1017851_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1017851_H (mean corpuscular volume QTL GWAS1017851 (human)) Homo sapiens

Symbol: GWAS1017851_H
Name: mean corpuscular volume QTL GWAS1017851 (human)
RGD ID: 407368875
Trait: mean corpuscular volume
Measurement Type: mean corpuscular volume   (CMO:0000038)    
LOD Score: Not Available
P Value: 6.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386164,055,994 - 164,055,995RGD_MAPPER_PIPELINEGRCh38
GRCh376164,477,026 - 164,477,027RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1017851_HHumanmean corpuscular volume  IAGPrs9356181405850206Based on the EFO term IDGWAS_CATALOGPMID:28017375

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1017851_HHumanobsolete_mean corpuscular volume  IAGPrs9356181405850206 GWAS_CATALOGPMID:28017375
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
38626117LOC105378102uncharacterized LOC1053781026163903500164058966Human

Position Markers

Peak: (rs9356181)
Human AssemblyChrPosition (strand)Source
GRCh386164,055,994 - 164,055,995RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
407368875GWAS1017851_Hmean corpuscular volume QTL GWAS1017851 (human)0.0000006mean corpuscular volumemean corpuscular volume (CMO:0000038)6164055994164055995Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1017851_H GCST004004 Mean corpuscular volume up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals. ? NR 6E-7 6.222 rs9356181 N/A obsolete_mean corpuscular volume (EFO:0004526)
 PMID:28017375
Database Acc Id Source(s)
GWAS Catalog GCST004004 GWAS Catalog

RGD Curation Notes
Note Type Note Reference