GWAS1013405_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1013405_H (diffuse large B-cell lymphoma QTL GWAS1013405 (human)) Homo sapiens

Symbol: GWAS1013405_H
Name: diffuse large B-cell lymphoma QTL GWAS1013405 (human)
RGD ID: 407364429
Trait: diffuse large B-cell lymphoma
LOD Score: Not Available
P Value: 4.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38224,471,603 - 24,471,604RGD_MAPPER_PIPELINEGRCh38
GRCh37224,694,472 - 24,694,473RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1013405_HHumandiffuse large B-cell lymphoma  IAGPrs79480871405850206 GWAS_CATALOGPMID:25261932
Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs79480871)
Human AssemblyChrPosition (strand)Source
GRCh38224,471,603 - 24,471,604RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407364429GWAS1013405_Hdiffuse large B-cell lymphoma QTL GWAS1013405 (human)4e-08diffuse large B-cell lymphoma22447160324471604Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1013405_H GCST002636 Diffuse large B cell lymphoma 3,857 European ancestry cases, 7,666 European ancestry controls T 0.062 4E-8 7.398 rs79480871 1.34 diffuse large B-cell lymphoma (EFO:0000403)
 PMID:25261932
Database Acc Id Source(s)
GWAS Catalog GCST002636 GWAS Catalog

RGD Curation Notes
Note Type Note Reference