GWAS1013288_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1013288_H (attention deficit hyperactivity disorder, risk-taking behaviour QTL GWAS1013288 (human)) Homo sapiens

Symbol: GWAS1013288_H
Name: attention deficit hyperactivity disorder, risk-taking behaviour QTL GWAS1013288 (human)
RGD ID: 407364312
Trait: attention deficit hyperactivity disorder, risk-taking behaviour
LOD Score: Not Available
P Value: 5.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38320,682,712 - 20,682,713RGD_MAPPER_PIPELINEGRCh38
GRCh37320,724,204 - 20,724,205RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs2886697)
Human AssemblyChrPosition (strand)Source
GRCh38320,682,712 - 20,682,713RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human
407364312GWAS1013288_Hattention deficit hyperactivity disorder, risk-taking behaviour QTL GWAS1013288 (human)5e-10attention deficit hyperactivity disorder, risk-taking behaviour32068271220682713Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1013288_H GCST90429151 Attention deficit hyperactivity disorder or risk-taking behavior (pleiotropy) 38,691 European ancestry ADHD cases, 225,534 European ancestry controls, 466,571 European ancestry individuals with risk-taking behavior measurements ? NR 5E-10 9.302 rs2886697 N/A attention deficit hyperactivity disorder (EFO:0003888)
risk-taking behaviour (EFO:0008579)
 PMID:38565336
Database Acc Id Source(s)
GWAS Catalog GCST90429151 GWAS Catalog

RGD Curation Notes
Note Type Note Reference