GWAS1003485_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1003485_H (BMI-adjusted waist-hip ratio QTL GWAS1003485 (human)) Homo sapiens

Symbol: GWAS1003485_H
Name: BMI-adjusted waist-hip ratio QTL GWAS1003485 (human)
RGD ID: 407354509
Trait: BMI-adjusted waist-hip ratio
LOD Score: Not Available
P Value: 2.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38352,498,102 - 52,498,103RGD_MAPPER_PIPELINEGRCh38
GRCh37352,532,118 - 52,532,119RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1003485_HHumanBMI-adjusted waist-hip ratio  IAGPrs13326165405850206 GWAS_CATALOGPMID:34021172
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1321166STAB1stabilin 135249533852524495Human

Position Markers

Peak: (rs13326165)
Human AssemblyChrPosition (strand)Source
GRCh38352,498,102 - 52,498,103RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407080610GWAS729586_Htriglyceride measurement QTL GWAS729586 (human)0.000001triglyceride measurementblood triglyceride level (CMO:0000118)35249810252498103Human
407061761GWAS710737_Hapolipoprotein A 1 measurement QTL GWAS710737 (human)1e-15apolipoprotein A 1 measurementblood apolipoprotein AI level (CMO:0000520)35249810252498103Human
407080609GWAS729585_Htriglyceride measurement QTL GWAS729585 (human)0.000009triglyceride measurementblood triglyceride level (CMO:0000118)35249810252498103Human
1298487BFD1_HBody fluid distribution QTL 1 (human)3.94Body fluid distributionimpedance ratio33638071262380712Human
407048523GWAS697499_Hhigh density lipoprotein cholesterol measurement QTL GWAS697499 (human)9e-11high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)35249810252498103Human
1298489RA4_HRheumatoid arthritis QTL 4 (human)0.0283Joint/bone inflammationrheumatoid arthritis33638071262380712Human
407354509GWAS1003485_HBMI-adjusted waist-hip ratio QTL GWAS1003485 (human)2e-11BMI-adjusted waist-hip ratio35249810252498103Human
1643509BW293_HBody Weight QTL 293 (human)1.42Body weightBMI33638071262380712Human
1331643COPD16_HChronic obstructive pulmonary disease QTL 16 (human)1.07Chronic airflow obstructionpost-BD FEV1 minus pre-BD FEV1/pre-BD FEV1 x 10034938065175380651Human
406967475GWAS616451_Hhigh density lipoprotein cholesterol measurement QTL GWAS616451 (human)1e-10high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)35249810252498103Human
407358736GWAS1007712_HBMI-adjusted waist circumference QTL GWAS1007712 (human)5e-08BMI-adjusted waist circumference35249810252498103Human
407311580GWAS960556_HBMI-adjusted waist circumference QTL GWAS960556 (human)1e-11BMI-adjusted waist-hip ratio35249810252498103Human
2289308BW392_HBody weight QTL 392 (human)1.42Body weightBMI33638071262380712Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS616451_H GCST004232 HDL cholesterol levels 34,930 East Asian ancestry individuals, 187,167 European ancestry individuals A 0.187 1E-10 10 rs13326165 0.0289 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:28334899
GWAS697499_H GCST002223 HDL cholesterol 94,595 European ancestry individuals A 0.21 9E-11 10.046 rs13326165 0.029 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:24097068
GWAS710737_H GCST010241 Apolipoprotein A1 levels 393,193 European ancestry individuals A 0.204628 1E-15 15 rs13326165 0.0194797 apolipoprotein A 1 measurement (EFO:0004614)
 PMID:32203549
GWAS729585_H GCST007142 Triglycerides 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals A 0.194 0.000009 5.046 rs13326165 0.025 triglyceride measurement (EFO:0004530)
 PMID:29507422
GWAS729586_H GCST007142 Triglycerides 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals A NR 0.000001 6 rs13326165 0.026 triglyceride measurement (EFO:0004530)
 PMID:29507422
GWAS960556_H GCST90020024 A body shape index 219,872 British ancestry women A NR 1E-11 11 rs13326165 0.0239145 BMI-adjusted waist circumference (EFO:0007789)
 PMID:34021172
None Available GCST90020025 Waist-to-hip ratio adjusted for BMI 219,872 British ancestry women A NR 1E-11 11 rs13326165 0.0235626 BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:34021172
GWAS1003485_H GCST90020027 Waist-hip index 219,872 British ancestry women A NR 2E-11 10.699 rs13326165 0.0233588 BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:34021172
GWAS1007712_H GCST90020029 Waist circumference adjusted for body mass index 219,872 British ancestry women A NR 5E-8 7.302 rs13326165 0.0191789 BMI-adjusted waist circumference (EFO:0007789)
 PMID:34021172
Database Acc Id Source(s)
GWAS Catalog GCST90020027 GWAS Catalog

RGD Curation Notes
Note Type Note Reference