GWAS1003376_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1003376_H (BMI-adjusted hip circumference QTL GWAS1003376 (human)) Homo sapiens

Symbol: GWAS1003376_H
Name: BMI-adjusted hip circumference QTL GWAS1003376 (human)
RGD ID: 407354400
Trait: BMI-adjusted hip circumference
Measurement Type: hip circumference   (CMO:0000014)    
LOD Score: Not Available
P Value: 5.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38312,068,747 - 12,068,748RGD_MAPPER_PIPELINEGRCh38
GRCh37312,110,247 - 12,110,248RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1003376_HHumanhip circumference  IAGPrs307586405850206Based on the EFO term IDGWAS_CATALOGPMID:34021172

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1003376_HHumanBMI-adjusted hip circumference  IAGPrs307586405850206 GWAS_CATALOGPMID:34021172
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
736267SYN2synapsin II31200438812192032Human

Position Markers

Peak: (rs307586)
Human AssemblyChrPosition (strand)Source
GRCh38312,068,747 - 12,068,748RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407354400GWAS1003376_HBMI-adjusted hip circumference QTL GWAS1003376 (human)5e-11BMI-adjusted hip circumferencehip circumference (CMO:0000014)31206874712068748Human
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1003376_H GCST90020026 Hip index 219,872 British ancestry women C NR 5E-11 10.302 rs307586 0.0301651 BMI-adjusted hip circumference (EFO:0008039)
 PMID:34021172
Database Acc Id Source(s)
GWAS Catalog GCST90020026 GWAS Catalog

RGD Curation Notes
Note Type Note Reference