GWAS999325_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS999325_H (lip morphology measurement QTL GWAS999325 (human)) Homo sapiens

Symbol: GWAS999325_H
Name: lip morphology measurement QTL GWAS999325 (human)
RGD ID: 407350349
Trait: lip morphology measurement
LOD Score: Not Available
P Value: 2.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3835,493,590 - 5,493,591RGD_MAPPER_PIPELINEGRCh38
GRCh3735,535,277 - 5,535,278RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS999325_HHumanlip morphology measurement  IAGPrs4685943405850206 GWAS_CATALOGPMID:27560520
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs4685943)
Human AssemblyChrPosition (strand)Source
GRCh3835,493,590 - 5,493,591RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human
407350349GWAS999325_Hlip morphology measurement QTL GWAS999325 (human)0.0000002lip morphology measurement354935905493591Human
407256059GWAS905035_Hmouth morphology measurement QTL GWAS905035 (human)0.000001mouth morphology measurement354935905493591Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS905035_H GCST004316 Facial morphology (factor 12, vertical position of sublabial sulcus relative to central midface) 2,187 European ancestry individuals T 0.00917 0.000001 6 rs4685943 0.7797 mouth morphology measurement (EFO:0007955)
 PMID:28441456
GWAS999325_H GCST003644 Lip morphology 2,447 European ancestry individuals T 0.009671 2E-7 6.699 rs4685943 1.491 lip morphology measurement (EFO:0007845)
 PMID:27560520
Database Acc Id Source(s)
GWAS Catalog GCST003644 GWAS Catalog

RGD Curation Notes
Note Type Note Reference