GWAS997009_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS997009_H (electrocardiography QTL GWAS997009 (human)) Homo sapiens

Symbol: GWAS997009_H
Name: electrocardiography QTL GWAS997009 (human)
RGD ID: 407348033
Trait: electrocardiography
LOD Score: Not Available
P Value: 7.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38314,239,370 - 14,239,371RGD_MAPPER_PIPELINEGRCh38
GRCh37314,280,870 - 14,280,871RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS997009_HHumanelectrocardiography  IAGPrs4685090405850206 GWAS_CATALOGPMID:32916098
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs4685090)
Human AssemblyChrPosition (strand)Source
GRCh38314,239,370 - 14,239,371RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407151604GWAS800580_HQRS duration QTL GWAS800580 (human)1e-12QRS durationQRS duration (CMO:0000267)31423937014239371Human
407271733GWAS920709_HPR interval QTL GWAS920709 (human)2e-17PR intervalPR interval (CMO:0000233)31423937014239371Human
407348036GWAS997012_Helectrocardiography QTL GWAS997012 (human)3e-15electrocardiography31423937014239371Human
407348035GWAS997011_Helectrocardiography QTL GWAS997011 (human)1e-13electrocardiography31423937014239371Human
407348034GWAS997010_Helectrocardiography QTL GWAS997010 (human)6e-12electrocardiography31423937014239371Human
407348033GWAS997009_Helectrocardiography QTL GWAS997009 (human)7e-10electrocardiography31423937014239371Human
407348032GWAS997008_Helectrocardiography QTL GWAS997008 (human)2e-15electrocardiography31423937014239371Human
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS800580_H GCST90179162 QRS duration 212,199 European ancestry individuals T 0.2203 1E-12 12 rs4685090 0.0271 QRS duration (EFO:0005055)
 PMID:36050321
GWAS920709_H GCST010320 PR interval 271,570 European ancestry individuals G 0.7817 2E-17 16.699 rs4685090 0.684 PR interval (EFO:0004462)
 PMID:32439900
GWAS997008_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.777353 2E-15 14.699 rs4685090 0.053023 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS997009_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.777353 7E-10 9.155 rs4685090 0.0394431 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS997010_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.777353 6E-12 11.222 rs4685090 0.0453128 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS997011_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.777353 1E-13 13 rs4685090 0.0492067 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS997012_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.777353 3E-15 14.523 rs4685090 0.0532218 electrocardiography (EFO:0004327)
 PMID:32916098
Database Acc Id Source(s)
GWAS Catalog GCST010796 GWAS Catalog

RGD Curation Notes
Note Type Note Reference