GWAS992883_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS992883_H (lymphocyte count QTL GWAS992883 (human)) Homo sapiens

Symbol: GWAS992883_H
Name: lymphocyte count QTL GWAS992883 (human)
RGD ID: 407343907
Trait: lymphocyte count
Measurement Type: blood lymphocyte count   (CMO:0000031)    
LOD Score: Not Available
P Value: 9.0E-45
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382230,107,182 - 30,107,183RGD_MAPPER_PIPELINEGRCh38
GRCh372230,503,171 - 30,503,172RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS992883_HHumanblood lymphocyte count  IAGPrs6006356405850206Based on the EFO term IDGWAS_CATALOGPMID:34594039

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS992883_HHumanlymphocyte count  IAGPrs6006356405850206 GWAS_CATALOGPMID:34594039
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1348799HORMAD2HORMA domain containing 2223007773230207456Human

Position Markers

Peak: (rs6006356)
Human AssemblyChrPosition (strand)Source
GRCh382230,107,182 - 30,107,183RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581529BP71_HBlood pressure QTL 71 (human)20.001Blood pressurepulse pressure221109496637094966Human
407343907GWAS992883_Hlymphocyte count QTL GWAS992883 (human)9e-45lymphocyte countblood lymphocyte count (CMO:0000031)223010718230107183Human
2289428BW313_HBody weight QTL 313 (human)2.090.0015Body weightBMI221134428437344284Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS992883_H GCST90018962 Lymphocyte count 349,856 European ancestry individuals, 95,717 East Asian ancestry individuals A NR 9E-45 44.046 rs6006356 0.0306 lymphocyte count (EFO:0004587)
 PMID:34594039
Database Acc Id Source(s)
GWAS Catalog GCST90018962 GWAS Catalog

RGD Curation Notes
Note Type Note Reference