GWAS992418_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS992418_H (urate measurement QTL GWAS992418 (human)) Homo sapiens

Symbol: GWAS992418_H
Name: urate measurement QTL GWAS992418 (human)
RGD ID: 407343442
Trait: urate measurement
Measurement Type: blood uric acid level   (CMO:0000501)    
LOD Score: Not Available
P Value: 2.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381242,458,415 - 42,458,416RGD_MAPPER_PIPELINEGRCh38
GRCh371242,852,217 - 42,852,218RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS992418_HHumanblood uric acid level  IAGPrs1051453405850206Based on the EFO term IDGWAS_CATALOGPMID:38658550

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS992418_HHumanurate measurement  IAGPrs1051453405850206 GWAS_CATALOGPMID:38658550
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1346789PRICKLE1prickle planar cell polarity protein 1124245675742589746Human

Position Markers

Peak: (rs1051453)
Human AssemblyChrPosition (strand)Source
GRCh381242,458,415 - 42,458,416RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407343442GWAS992418_Hurate measurement QTL GWAS992418 (human)2e-09urate measurementblood uric acid level (CMO:0000501)124245841542458416Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS992418_H GCST90319906 Serum urate levels 677,373 European ancestry individuals T NR 2E-9 8.699 rs1051453 0.0163 urate measurement (EFO:0004531)
 PMID:38658550
Database Acc Id Source(s)
GWAS Catalog GCST90319906 GWAS Catalog

RGD Curation Notes
Note Type Note Reference