GWAS990635_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS990635_H (mean arterial pressure QTL GWAS990635 (human)) Homo sapiens

Symbol: GWAS990635_H
Name: mean arterial pressure QTL GWAS990635 (human)
RGD ID: 407341659
Trait: mean arterial pressure
Measurement Type: mean arterial blood pressure   (CMO:0000009)    
LOD Score: Not Available
P Value: 9.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh385123,147,279 - 123,147,280RGD_MAPPER_PIPELINEGRCh38
GRCh375122,482,973 - 122,482,974RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS990635_HHumanmean arterial blood pressure  IAGPrs6886162405850206Based on the EFO term IDGWAS_CATALOGPMID:34594039

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS990635_HHumanmean arterial pressure  IAGPrs6886162405850206 GWAS_CATALOGPMID:34594039
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1350258PRDM6PR/SET domain 65123089241123194266Human

Position Markers

Peak: (rs6886162)
Human AssemblyChrPosition (strand)Source
GRCh385123,147,279 - 123,147,280RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407341659GWAS990635_Hmean arterial pressure QTL GWAS990635 (human)9e-11mean arterial pressuremean arterial blood pressure (CMO:0000009)5123147279123147280Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS990635_H GCST90018963 Mean arterial pressure 360,863 European ancestry individuals, 145,502 East Asian ancestry individuals G NR 9E-11 10.046 rs6886162 0.0212 mean arterial pressure (EFO:0006340)
 PMID:34594039
None Available GCST90335168 Mean arterial pressure (BMI unadjusted) 100,453 Chinese Han ancestry individuals G 0.439 7E-14 13.155 rs6886162 0.4926 mean arterial pressure (EFO:0006340)
 PMID:39048560
None Available GCST90335165 Diastolic blood pressure (BMI adjusted) 100,453 Chinese Han ancestry individuals G 0.439 3E-10 9.523 rs6886162 0.3348 diastolic blood pressure (EFO:0006336)
 PMID:39048560
None Available GCST90335164 Diastolic blood pressure (BMI unadjusted) 100,453 Chinese Han ancestry individuals G 0.439 5E-10 9.302 rs6886162 0.3376 diastolic blood pressure (EFO:0006336)
 PMID:39048560
None Available GCST90335163 Systolic blood pressure (BMI adjusted) 100,453 Chinese Han ancestry individuals G 0.439 9E-17 16.046 rs6886162 0.7987 systolic blood pressure (EFO:0006335)
 PMID:39048560
None Available GCST90335169 Mean arterial pressure (BMI adjusted) 100,453 Chinese Han ancestry individuals G 0.439 1E-14 14 rs6886162 0.4893 mean arterial pressure (EFO:0006340)
 PMID:39048560
None Available GCST90335162 Systolic blood pressure (BMI unadjusted) 100,453 Chinese Han ancestry individuals G 0.439 1E-15 15 rs6886162 0.8035 systolic blood pressure (EFO:0006335)
 PMID:39048560
Database Acc Id Source(s)
GWAS Catalog GCST90018963 GWAS Catalog

RGD Curation Notes
Note Type Note Reference