GWAS990154_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS990154_H (BMI-adjusted waist-hip ratio QTL GWAS990154 (human)) Homo sapiens

Symbol: GWAS990154_H
Name: BMI-adjusted waist-hip ratio QTL GWAS990154 (human)
RGD ID: 407341178
Trait: BMI-adjusted waist-hip ratio
LOD Score: Not Available
P Value: 5.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38352,504,284 - 52,504,285RGD_MAPPER_PIPELINEGRCh38
GRCh37352,538,300 - 52,538,301RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS990154_HHumanBMI-adjusted waist-hip ratio  IAGPrs7613444405850206 GWAS_CATALOGPMID:34021172
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1321166STAB1stabilin 135249533852524495Human
155654673LOC127397624H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:52538009-5253851435250399352504498Human

Position Markers

Peak: (rs7613444)
Human AssemblyChrPosition (strand)Source
GRCh38352,504,284 - 52,504,285RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407311767GWAS960743_HBMI-adjusted waist circumference QTL GWAS960743 (human)3e-08BMI-adjusted waist circumference35250428452504285Human
1298487BFD1_HBody fluid distribution QTL 1 (human)3.94Body fluid distributionimpedance ratio33638071262380712Human
407358737GWAS1007713_HBMI-adjusted waist circumference QTL GWAS1007713 (human)1e-08BMI-adjusted waist circumference35250428452504285Human
407354512GWAS1003488_HBMI-adjusted waist-hip ratio QTL GWAS1003488 (human)3e-09BMI-adjusted waist-hip ratio35250428452504285Human
1298489RA4_HRheumatoid arthritis QTL 4 (human)0.0283Joint/bone inflammationrheumatoid arthritis33638071262380712Human
1643509BW293_HBody Weight QTL 293 (human)1.42Body weightBMI33638071262380712Human
407341178GWAS990154_HBMI-adjusted waist-hip ratio QTL GWAS990154 (human)5e-09BMI-adjusted waist-hip ratio35250428452504285Human
2289308BW392_HBody weight QTL 392 (human)1.42Body weightBMI33638071262380712Human
1331643COPD16_HChronic obstructive pulmonary disease QTL 16 (human)1.07Chronic airflow obstructionpost-BD FEV1 minus pre-BD FEV1/pre-BD FEV1 x 10034938065175380651Human
406999341GWAS648317_HBMI-adjusted waist circumference QTL GWAS648317 (human)1e-10BMI-adjusted waist circumference35250428452504285Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS648317_H GCST009867 Waist circumference adjusted for body mass index 457,690 European ancestry individuals ? NR 1E-10 10 rs7613444 N/A BMI-adjusted waist circumference (EFO:0007789)
 PMID:31669095
GWAS960743_H GCST90020024 A body shape index 219,872 British ancestry women C NR 3E-8 7.523 rs7613444 0.0212838 BMI-adjusted waist circumference (EFO:0007789)
 PMID:34021172
GWAS990154_H GCST90020025 Waist-to-hip ratio adjusted for BMI 219,872 British ancestry women C NR 5E-9 8.302 rs7613444 0.0220997 BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:34021172
GWAS1003488_H GCST90020027 Waist-hip index 219,872 British ancestry women C NR 3E-9 8.523 rs7613444 0.0225022 BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:34021172
GWAS1007713_H GCST90020029 Waist circumference adjusted for body mass index 219,872 British ancestry women C NR 1E-8 8 rs7613444 0.0218914 BMI-adjusted waist circumference (EFO:0007789)
 PMID:34021172
Database Acc Id Source(s)
GWAS Catalog GCST90020025 GWAS Catalog

RGD Curation Notes
Note Type Note Reference