GWAS985436_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS985436_H (insomnia QTL GWAS985436 (human)) Homo sapiens

Symbol: GWAS985436_H
Name: insomnia QTL GWAS985436 (human)
RGD ID: 407336460
Trait: insomnia
LOD Score: Not Available
P Value: 4.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38778,525,247 - 78,525,248RGD_MAPPER_PIPELINEGRCh38
GRCh37778,154,564 - 78,154,565RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Insomnia  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
735850MAGI2membrane associated guanylate kinase, WW and PDZ domain containing 277801705579453667Human

Position Markers

Peak: (rs1468774)
Human AssemblyChrPosition (strand)Source
GRCh38778,525,247 - 78,525,248RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407336460GWAS985436_Hinsomnia QTL GWAS985436 (human)4e-09insomnia77852524778525248Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS985436_H GCST90131901 Insomnia 593,724 European ancestry cases, 1,771,286 European ancestry controls C NR 4E-9 8.398 rs1468774 0.005 insomnia (EFO:0004698)
 PMID:35835914
Database Acc Id Source(s)
GWAS Catalog GCST90131901 GWAS Catalog

RGD Curation Notes
Note Type Note Reference