GWAS985117_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS985117_H (systolic blood pressure QTL GWAS985117 (human)) Homo sapiens

Symbol: GWAS985117_H
Name: systolic blood pressure QTL GWAS985117 (human)
RGD ID: 407336141
Trait: systolic blood pressure
Measurement Type: systolic blood pressure   (CMO:0000004)    
LOD Score: Not Available
P Value: 5.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh385148,982,059 - 148,982,060RGD_MAPPER_PIPELINEGRCh38
GRCh375148,361,622 - 148,361,623RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS985117_HHumansystolic blood pressure  IAGPrs17722107405850206Based on the EFO term IDGWAS_CATALOGPMID:34594039

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS985117_HHumansystolic blood pressure  IAGPrs17722107405850206 GWAS_CATALOGPMID:34594039
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs17722107)
Human AssemblyChrPosition (strand)Source
GRCh385148,982,059 - 148,982,060RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407346887GWAS995863_Hdiastolic blood pressure QTL GWAS995863 (human)2e-14diastolic blood pressurediastolic blood pressure (CMO:0000005)5148982059148982060Human
407341891GWAS990867_Hmean arterial pressure QTL GWAS990867 (human)3e-15mean arterial pressuremean arterial blood pressure (CMO:0000009)5148982059148982060Human
1357314AASTH54_HAllergic/atopic asthma related QTL 54 (human)3.560.0003Reversible airflow obstructiontotal serum IgE5135892246150155845Human
407336141GWAS985117_Hsystolic blood pressure QTL GWAS985117 (human)5e-13systolic blood pressuresystolic blood pressure (CMO:0000004)5148982059148982060Human
407119066GWAS768042_Hsystolic blood pressure QTL GWAS768042 (human)1e-16systolic blood pressuresystolic blood pressure (CMO:0000004)5148982059148982060Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS768042_H GCST007087 Systolic blood pressure approximately 422,000 European ancestry individuals ? NR 1E-16 16 rs17722107 N/A systolic blood pressure (EFO:0006335)
 PMID:30595370
GWAS985117_H GCST90018972 Systolic blood pressure 340,159 European ancestry individuals, 145,505 East Asian ancestry individuals C NR 5E-13 12.302 rs17722107 0.0168 systolic blood pressure (EFO:0006335)
 PMID:34594039
GWAS990867_H GCST90018963 Mean arterial pressure 360,863 European ancestry individuals, 145,502 East Asian ancestry individuals C NR 3E-15 14.523 rs17722107 0.0187 mean arterial pressure (EFO:0006340)
 PMID:34594039
GWAS995863_H GCST90018952 Diastolic blood pressure 340,162 European ancestry individuals, 145,515 East Asian ancestry individuals C NR 2E-14 13.699 rs17722107 0.0188 diastolic blood pressure (EFO:0006336)
 PMID:34594039
Database Acc Id Source(s)
GWAS Catalog GCST90018972 GWAS Catalog

RGD Curation Notes
Note Type Note Reference