GWAS982638_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS982638_H (very low density lipoprotein cholesterol measurement QTL GWAS982638 (human)) Homo sapiens

Symbol: GWAS982638_H
Name: very low density lipoprotein cholesterol measurement QTL GWAS982638 (human)
RGD ID: 407333662
Trait: very low density lipoprotein cholesterol measurement
Measurement Type: blood very low density lipoprotein cholesterol level   (CMO:0000648)    
LOD Score: Not Available
P Value: 1.0E-19
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386160,122,116 - 160,122,117RGD_MAPPER_PIPELINEGRCh38
GRCh376160,543,148 - 160,543,149RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS982638_HHumanblood very low density lipoprotein cholesterol level  IAGPrs12208357405850206Based on the EFO term IDGWAS_CATALOGPMID:35213538

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS982638_HHumanvery low density lipoprotein cholesterol measurement  IAGPrs12208357405850206 GWAS_CATALOGPMID:35213538
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
732626SLC22A1solute carrier family 22 member 16160121815160158718Human

Position Markers

Peak: (rs12208357)
Human AssemblyChrPosition (strand)Source
GRCh386160,122,116 - 160,122,117RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407131845GWAS780821_Htriglyceride:HDL cholesterol ratio QTL GWAS780821 (human)4e-09glycoprotein measurement6160122116160122117Human
406928073GWAS577049_HX-11381 measurement QTL GWAS577049 (human)2e-29X-11381 measurement6160122116160122117Human
406901708GWAS550684_Hbeta-hydroxyisovalerate measurement QTL GWAS550684 (human)5e-14very low density lipoprotein cholesterol measurement, lipid measurementblood lipid measurement (CMO:0000050)6160122116160122117Human
406917837GWAS566813_Hlow density lipoprotein cholesterol measurement QTL GWAS566813 (human)3e-44low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)6160122116160122117Human
406955725GWAS604701_Htotal cholesterol measurement QTL GWAS604701 (human)9e-14total cholesterol measurementblood total cholesterol level (CMO:0000051)6160122116160122117Human
407065807GWAS714783_Hmetabolite measurement QTL GWAS714783 (human)3e-34metabolite measurement6160122116160122117Human
407062989GWAS711965_Hisobutyrylcarnitine measurement QTL GWAS711965 (human)2e-52isobutyrylcarnitine measurement6160122116160122117Human
407092685GWAS741661_Hmetabolite measurement QTL GWAS741661 (human)1e-15very low density lipoprotein cholesterol measurement, lipid measurementblood lipid measurement (CMO:0000050)6160122116160122117Human
407288776GWAS937752_Hvery low density lipoprotein cholesterol measurement, phospholipid measurement QTL GWAS937752 (human)4e-17free cholesterol measurement, very low density lipoprotein cholesterol measurementblood cholesterol level (CMO:0002280)6160122116160122117Human
407095116GWAS744092_Hpimeloylcarnitine/3-methyladipoylcarnitine (C7-DC) measurement QTL GWAS744092 (human)5e-26pimeloylcarnitine/3-methyladipoylcarnitine (C7-DC) measurement6160122116160122117Human
407121355GWAS770331_Hlow density lipoprotein cholesterol measurement, free cholesterol:total lipids ratio QTL GWAS770331 (human)4e-15low density lipoprotein cholesterol measurement, free cholesterol:total lipids ratioblood low density lipoprotein cholesterol level (CMO:0000053)6160122116160122117Human
407327703GWAS976679_Htotal cholesterol measurement, very low density lipoprotein cholesterol measurement QTL GWAS976679 (human)3e-19very low density lipoprotein cholesterol measurement, lipid measurementblood lipid measurement (CMO:0000050)6160122116160122117Human
407237460GWAS886436_Hphospholipid measurement, intermediate density lipoprotein measurement QTL GWAS886436 (human)2e-13phospholipid measurement, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)6160122116160122117Human
407236311GWAS885287_Hintermediate density lipoprotein measurement QTL GWAS885287 (human)8e-15intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)6160122116160122117Human
407065808GWAS714784_Hmetabolite measurement QTL GWAS714784 (human)9e-30metabolite measurement6160122116160122117Human
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
407037525GWAS686501_Hcholesteryl ester measurement QTL GWAS686501 (human)5e-12blood lipid amount (VT:0003949)blood lipid measurement (CMO:0000050)6160122116160122117Human
407024984GWAS673960_HX-11381 measurement QTL GWAS673960 (human)1e-27X-11381 measurement6160122116160122117Human
407038553GWAS687529_Hfree cholesterol in medium VLDL measurement QTL GWAS687529 (human)1e-12free cholesterol in medium VLDL measurement 6160122116160122117Human
407030751GWAS679727_Hfatty acid measurement QTL GWAS679727 (human)5e-10fatty acid measurement6160122116160122117Human
407327206GWAS976182_Hlow density lipoprotein cholesterol measurement QTL GWAS976182 (human)5e-17low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)6160122116160122117Human
407236199GWAS885175_Hapolipoprotein A 1 measurement, apolipoprotein B measurement QTL GWAS885175 (human)2e-16very low density lipoprotein cholesterol measurementblood cholesterol level (CMO:0002280)6160122116160122117Human
407326435GWAS975411_Hcholesteryl ester measurement, low density lipoprotein cholesterol measurement QTL GWAS975411 (human)4e-16blood lipid amount (VT:0003949)blood low density lipoprotein cholesterol level (CMO:0000053)6160122116160122117Human
407270112GWAS919088_Htotal cholesterol measurement, intermediate density lipoprotein measurement QTL GWAS919088 (human)8e-09total cholesterol measurement, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)6160122116160122117Human
407314029GWAS963005_Hpolyunsaturated fatty acid measurement QTL GWAS963005 (human)4e-10milk polyunsaturated fatty acid amount (VT:0010374)milk polyunsaturated fatty acid measurement (CMO:0000821)6160122116160122117Human
407063016GWAS711992_Hnicotinamide riboside measurement QTL GWAS711992 (human)3e-26nicotinamide riboside measurement6160122116160122117Human
407257325GWAS906301_Htotal cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS906301 (human)1e-13low density lipoprotein cholesterol measurement, phospholipid measurementblood low density lipoprotein cholesterol level (CMO:0000053)6160122116160122117Human
407269099GWAS918075_Hcarnitine measurement QTL GWAS918075 (human)4e-27blood carnitine amount (VT:0003977)6160122116160122117Human
407036786GWAS685762_Htriglycerides in small LDL measurement QTL GWAS685762 (human)6e-11triglycerides in small LDL measurement 6160122116160122117Human
406929904GWAS578880_Hapolipoprotein B measurement QTL GWAS578880 (human)5e-54apolipoprotein B measurementblood apoliprotein B level (CMO:0000522)6160122116160122117Human
407094007GWAS742983_Hmetabolite measurement QTL GWAS742983 (human)1e-21metabolite measurement6160122116160122117Human
407037172GWAS686148_Htotal lipids in very small VLDL measurement QTL GWAS686148 (human)6e-15total lipids in very small VLDL measurement6160122116160122117Human
407089909GWAS738885_Htriglycerides in small HDL measurement QTL GWAS738885 (human)8e-10triglycerides in small HDL measurementblood high density lipoprotein triglyceride level (CMO:0002686)6160122116160122117Human
407309040GWAS958016_Hapolipoprotein B measurement QTL GWAS958016 (human)7e-17apolipoprotein B measurementblood apoliprotein B level (CMO:0000522)6160122116160122117Human
407097722GWAS746698_Htriglyceride measurement QTL GWAS746698 (human)2e-09triglyceride measurementblood triglyceride level (CMO:0000118)6160122116160122117Human
407035384GWAS684360_Hvery low density lipoprotein cholesterol measurement QTL GWAS684360 (human)3e-15total cholesterol measurement, very low density lipoprotein cholesterol measurementblood total cholesterol level (CMO:0000051)6160122116160122117Human
407097721GWAS746697_Htriglyceride measurement QTL GWAS746697 (human)9e-09triglyceride measurementblood triglyceride level (CMO:0000118)6160122116160122117Human
407153022GWAS801998_Hurinary metabolite measurement QTL GWAS801998 (human)8e-16urinary metabolite measurement6160122116160122117Human
407288700GWAS937676_Hlow density lipoprotein cholesterol measurement, phospholipid measurement QTL GWAS937676 (human)6e-14low density lipoprotein cholesterol measurement, phospholipid measurementblood low density lipoprotein cholesterol level (CMO:0000053)6160122116160122117Human
407034745GWAS683721_Hphospholipids in large VLDL measurement QTL GWAS683721 (human)7e-11phospholipids in large VLDL measurementblood very low density lipoprotein phospholipid level (CMO:0001571)6160122116160122117Human
407069816GWAS718792_Htotal cholesterol measurement QTL GWAS718792 (human)3e-13low density lipoprotein cholesterol measurement, lipid measurementblood lipid measurement (CMO:0000050)6160122116160122117Human
407331323GWAS980299_Hvery low density lipoprotein cholesterol measurement, phospholipid measurement QTL GWAS980299 (human)4e-20very low density lipoprotein cholesterol measurement, phospholipid measurementblood very low density lipoprotein cholesterol level (CMO:0000648)6160122116160122117Human
406900102GWAS549078_Hlipid measurement QTL GWAS549078 (human)1e-28lipid measurementblood lipid measurement (CMO:0000050)6160122116160122117Human
407077252GWAS726228_H3-methylglutarylcarnitine (2) measurement QTL GWAS726228 (human)1e-593-methylglutarylcarnitine (2) measurement6160122116160122117Human
407216514GWAS865490_Hlow density lipoprotein cholesterol measurement QTL GWAS865490 (human)6e-16low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)6160122116160122117Human
407095306GWAS744282_HX-11381 measurement QTL GWAS744282 (human)7e-66X-11381 measurement6160122116160122117Human
407038088GWAS687064_Hfree cholesterol in large VLDL measurement QTL GWAS687064 (human)3e-11butyrylcarnitine (C4) measurement6160122116160122117Human
407312524GWAS961500_Hcholesteryl ester measurement, very low density lipoprotein cholesterol measurement QTL GWAS961500 (human)6e-20blood lipid amount (VT:0003949)blood very low density lipoprotein cholesterol level (CMO:0000648)6160122116160122117Human
407317386GWAS966362_HX-11381 measurement QTL GWAS966362 (human)6e-28X-11381 measurement6160122116160122117Human
407037586GWAS686562_Hcholesteryl ester measurement QTL GWAS686562 (human)2e-14blood lipid amount (VT:0003949)blood total cholesterol level (CMO:0000051)6160122116160122117Human
407320854GWAS969830_Hvery low density lipoprotein cholesterol measurement, phospholipid measurement QTL GWAS969830 (human)2e-18free cholesterol measurement, very low density lipoprotein cholesterol measurementblood cholesterol level (CMO:0002280)6160122116160122117Human
407311889GWAS960865_Hfree cholesterol measurement, very low density lipoprotein cholesterol measurement QTL GWAS960865 (human)2e-17free cholesterol measurement, very low density lipoprotein cholesterol measurementblood very low density lipoprotein cholesterol level (CMO:0000648)6160122116160122117Human
407333662GWAS982638_Hvery low density lipoprotein cholesterol measurement QTL GWAS982638 (human)1e-19very low density lipoprotein cholesterol measurementblood very low density lipoprotein cholesterol level (CMO:0000648)6160122116160122117Human
407310105GWAS959081_Hlinoleic acid measurement QTL GWAS959081 (human)2e-12linoleic acid measurementblood cholesterol level (CMO:0002280)6160122116160122117Human
407182886GWAS831862_Hvery low density lipoprotein cholesterol measurement QTL GWAS831862 (human)2e-11omega-6 polyunsaturated fatty acid measurementblood very low density lipoprotein cholesterol level (CMO:0000648)6160122116160122117Human
406903589GWAS552565_Hlow density lipoprotein cholesterol measurement QTL GWAS552565 (human)8e-13low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)6160122116160122117Human
407037223GWAS686199_Htotal lipids in small LDL QTL GWAS686199 (human)8e-12total lipids in small LDL6160122116160122117Human
406903590GWAS552566_Hlow density lipoprotein cholesterol measurement QTL GWAS552566 (human)5e-13total cholesterol measurementblood total cholesterol level (CMO:0000051)6160122116160122117Human
407175586GWAS824562_Halkaline phosphatase measurement QTL GWAS824562 (human)7e-16alkaline phosphatase measurementblood alkaline phosphatase activity level (CMO:0000576)6160122116160122117Human
407033771GWAS682747_Hvery low density lipoprotein cholesterol measurement QTL GWAS682747 (human)1e-14blood lipid amount (VT:0003949)blood low density lipoprotein cholesterol level (CMO:0000053)6160122116160122117Human
407090601GWAS739577_Hmetabolite measurement QTL GWAS739577 (human)3e-10metabolite measurement6160122116160122117Human
407242668GWAS891644_Hfree cholesterol measurement, intermediate density lipoprotein measurement QTL GWAS891644 (human)1e-08free cholesterol measurement, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)6160122116160122117Human
407063342GWAS712318_Hbutyrylcarnitine (C4) measurement QTL GWAS712318 (human)1e-17butyrylcarnitine (C4) measurement6160122116160122117Human
407131177GWAS780153_Htriglyceride:HDL cholesterol ratio QTL GWAS780153 (human)1e-11fatty acid measurement6160122116160122117Human
407024813GWAS673789_H3-methylglutarylcarnitine (2) measurement QTL GWAS673789 (human)2e-223-methylglutarylcarnitine (2) measurement6160122116160122117Human
407035565GWAS684541_Hcholesteryl ester measurement QTL GWAS684541 (human)7e-13blood lipid amount (VT:0003949)6160122116160122117Human
407255217GWAS904193_Hfatty acid measurement QTL GWAS904193 (human)4e-11fatty acid measurement6160122116160122117Human
407182908GWAS831884_Hvery low density lipoprotein cholesterol measurement, phospholipid measurement QTL GWAS831884 (human)3e-12lipid measurement, lipoprotein measurementblood lipoprotein measurement (CMO:0002690)6160122116160122117Human
407024696GWAS673672_Hisobutyrylcarnitine measurement QTL GWAS673672 (human)4e-54isobutyrylcarnitine measurement6160122116160122117Human
407035704GWAS684680_Hphospholipids in very small VLDL measurement QTL GWAS684680 (human)2e-15phospholipids in very small VLDL measurement 6160122116160122117Human
407328957GWAS977933_Hfatty acid measurement QTL GWAS977933 (human)2e-10fatty acid measurement6160122116160122117Human
407130552GWAS779528_Htriglyceride:HDL cholesterol ratio QTL GWAS779528 (human)7e-08triglyceride:HDL cholesterol ratio6160122116160122117Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human
406913855GWAS562831_H4-guanidinobutanoate measurement QTL GWAS562831 (human)1e-18blood lipid amount (VT:0003949)blood very low density lipoprotein cholesterol level (CMO:0000648)6160122116160122117Human
407064253GWAS713229_Hpropionylcarnitine (C3) measurement QTL GWAS713229 (human)9e-13low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)6160122116160122117Human
407081533GWAS730509_HX-24422 measurement QTL GWAS730509 (human)3e-57X-24422 measurement6160122116160122117Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS549078_H GCST90245100 Adipoylcarnitine levels 14,296 European ancestry individuals T 0.0792 1E-28 28 rs12208357 0.22172563 lipid measurement (EFO:0004529)
 PMID:36357675
GWAS550684_H GCST90245123 Beta-hydroxyisovalerate levels 14,296 European ancestry individuals T 0.0771 5E-14 13.302 rs12208357 0.14189129 beta-hydroxyisovalerate measurement (EFO:0800125)
 PMID:36357675
GWAS552565_H GCST007141 Low density lipoprotein cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C 0.925 8E-13 12.097 rs12208357 0.064 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:29507422
GWAS552566_H GCST007141 Low density lipoprotein cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C NR 5E-13 12.302 rs12208357 0.063 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:29507422
GWAS562831_H GCST90245060 4-guanidinobutanoate levels 14,296 European ancestry individuals T 0.0768 1E-18 18 rs12208357 0.16759215 4-guanidinobutanoate measurement (EFO:0800003)
 PMID:36357675
GWAS566813_H GCST010245 LDL cholesterol levels 440,546 European ancestry individuals C 0.929898 3E-44 43.523 rs12208357 0.057141 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:32203549
GWAS577049_H GCST90103242 X-11381 levels 8,809 European ancestry individuals T NR 2E-29 28.699 rs12208357 0.314 X-11381 measurement (EFO:0021228)
 PMID:35050183
GWAS578880_H GCST010243 Apolipoprotein B levels 439,214 European ancestry individuals C 0.92992 5E-54 53.302 rs12208357 0.0632075 apolipoprotein B measurement (EFO:0004615)
 PMID:32203549
GWAS604701_H GCST002896 Cholesterol, total up to 62,166 European ancestry individuals T 0.06 9E-14 13.046 rs12208357 0.092 total cholesterol measurement (EFO:0004574)
 PMID:25961943
GWAS673672_H GCST90199698 Isobutyrylcarnitine (c4) levels 8,243 European ancestry individuals T 0.0692646 4E-54 53.398 rs12208357 0.460572 isobutyrylcarnitine measurement (EFO:0021023)
 PMID:36635386
GWAS673789_H GCST90199971 3-methylglutarylcarnitine (2) levels 8,220 European ancestry individuals T 0.069276 2E-22 21.699 rs12208357 0.27557 3-methylglutarylcarnitine (2) measurement (EFO:0800074)
 PMID:36635386
GWAS673960_H GCST90200471 X-11381 levels 8,225 European ancestry individuals T 0.0685074 1E-27 27 rs12208357 0.32469 X-11381 measurement (EFO:0021228)
 PMID:36635386
GWAS679727_H GCST90269539 Total fatty acids levels (UKB data field 23442) 88,268 European ancestry individuals T 0.0706217 5E-10 9.302 rs12208357 0.0569732 fatty acid measurement (EFO:0005110)
 PMID:36764567
GWAS682747_H GCST90269500 VLDL cholesterol levels (UKB data field 23403) 88,329 European ancestry individuals T 0.0706411 1E-14 14 rs12208357 0.0713989 very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:36764567
GWAS683721_H GCST90269594 Phospholipids in large VLDL (UKB data field 23497) 88,329 European ancestry individuals T 0.0706411 7E-11 10.155 rs12208357 0.0586097 phospholipids in large VLDL measurement (EFO:0022169)
 PMID:36764567
GWAS684360_H GCST90269613 Concentration of very small VLDL particles (UKB data field 23516) 88,329 European ancestry individuals T 0.0706411 3E-15 14.523 rs12208357 0.0719414 very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:36764567
GWAS684541_H GCST90269645 Cholesteryl esters in small LDL (UKB data field 23548) 88,329 European ancestry individuals T 0.0706411 7E-13 12.155 rs12208357 0.0665776 cholesteryl ester measurement (EFO:0010351)
 PMID:36764567
GWAS684680_H GCST90269615 Phospholipids in very small VLDL (UKB data field 23518) 88,329 European ancestry individuals T 0.0706411 2E-15 14.699 rs12208357 0.0722473 phospholipids in very small VLDL measurement (EFO:0022300)
 PMID:36764567
GWAS685762_H GCST90269647 Triglycerides in small LDL (UKB data field 23550) 88,329 European ancestry individuals T 0.0706411 6E-11 10.222 rs12208357 0.0591353 triglycerides in small LDL measurement (EFO:0022323)
 PMID:36764567
GWAS686148_H GCST90269614 Total lipids in very small VLDL (UKB data field 23517) 88,329 European ancestry individuals T 0.0706411 6E-15 14.222 rs12208357 0.0709031 total lipids in very small VLDL measurement (EFO:0022156)
 PMID:36764567
GWAS686199_H GCST90269642 Total lipids in small LDL (UKB data field 23545) 88,329 European ancestry individuals T 0.0706411 8E-12 11.097 rs12208357 0.0634575 total lipids in small LDL (EFO:0022168)
 PMID:36764567
GWAS686501_H GCST90269638 Cholesteryl esters in medium LDL (UKB data field 23541) 88,329 European ancestry individuals T 0.0706411 5E-12 11.302 rs12208357 0.0640105 cholesteryl ester measurement (EFO:0010351)
 PMID:36764567
GWAS686562_H GCST90269513 Cholesteryl esters in VLDL (UKB data field 23416) 88,329 European ancestry individuals T 0.0706411 2E-14 13.699 rs12208357 0.0712263 cholesteryl ester measurement (EFO:0010351)
 PMID:36764567
GWAS687064_H GCST90269597 Free cholesterol in large VLDL (UKB data field 23500) 88,329 European ancestry individuals T 0.0706411 3E-11 10.523 rs12208357 0.0597999 free cholesterol in large VLDL measurement (EFO:0022265)
 PMID:36764567
GWAS687529_H GCST90269604 Free cholesterol in medium VLDL (UKB data field 23507) 88,329 European ancestry individuals T 0.0706411 1E-12 12 rs12208357 0.0659503 free cholesterol in medium VLDL measurement (EFO:0022269)
 PMID:36764567
None Available GCST90269608 Phospholipids in small VLDL (UKB data field 23511) 88,329 European ancestry individuals T 0.0706411 1E-14 14 rs12208357 0.0711734 phospholipids in small VLDL measurement (EFO:0022146)
 PMID:36764567
GWAS711965_H GCST90265402 Plasma isobutyrylcarnitine (C4) levels in chronic kidney disease 4,954 European ancestry individuals T 0.09 2E-52 51.699 rs12208357 0.416 isobutyrylcarnitine measurement (EFO:0021023)
 PMID:37277652
GWAS711992_H GCST90265721 Urine nicotinamide riboside levels in chronic kidney disease 4,907 European ancestry individuals T 0.09 3E-26 25.523 rs12208357 0.345 nicotinamide riboside measurement (EFO:0800156)
 PMID:37277652
GWAS712318_H GCST90264882 Plasma butyrylcarnitine (C4) levels in chronic kidney disease 4,825 European ancestry individuals T 0.09 1E-17 17 rs12208357 0.221 butyrylcarnitine (C4) measurement (EFO:0800201)
 PMID:37277652
GWAS713229_H GCST90265876 Plasma propionylcarnitine (C3) levels in chronic kidney disease 4,960 European ancestry individuals T 0.09 9E-13 12.046 rs12208357 0.133 propionylcarnitine (C3) measurement (EFO:0800210)
 PMID:37277652
GWAS714783_H GCST90266375 Plasma X-17323 levels in chronic kidney disease 4,793 European ancestry individuals T 0.09 3E-34 33.523 rs12208357 0.304 metabolite measurement (EFO:0004725)
 PMID:37277652
GWAS714784_H GCST90266376 Urine X-17323 levels in chronic kidney disease 4,896 European ancestry individuals T 0.09 9E-30 29.046 rs12208357 0.348 metabolite measurement (EFO:0004725)
 PMID:37277652
None Available GCST007143 Total cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C 0.925 5E-13 12.302 rs12208357 0.063 total cholesterol measurement (EFO:0004574)
 PMID:29507422
GWAS718792_H GCST007143 Total cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C NR 3E-13 12.523 rs12208357 0.062 total cholesterol measurement (EFO:0004574)
 PMID:29507422
GWAS726228_H GCST90245041 3-methylglutarylcarnitine (2) levels 14,296 European ancestry individuals T 0.0786 1E-59 59 rs12208357 0.3115357 3-methylglutarylcarnitine (2) measurement (EFO:0800074)
 PMID:36357675
None Available GCST90200673 Butyrylcarnitine (C4) levels 8,111 European ancestry individuals T 0.0700273 3E-11 10.523 rs12208357 0.198664 butyrylcarnitine (C4) measurement (EFO:0800201)
 PMID:36635386
GWAS730509_H GCST90245748 X-24422 levels 14,296 European ancestry individuals T 0.076 3E-57 56.523 rs12208357 0.3145166 X-24422 measurement (EFO:0800880)
 PMID:36357675
GWAS738885_H GCST90269675 Triglycerides in small HDL (UKB data field 23578) 88,329 European ancestry individuals T 0.0706411 8E-10 9.097 rs12208357 0.0554494 triglycerides in small HDL measurement (EFO:0022158)
 PMID:36764567
GWAS739577_H GCST90200623 X-24241 levels 8,053 European ancestry individuals T 0.069401 3E-10 9.523 rs12208357 0.190394 metabolite measurement (EFO:0004725)
 PMID:36635386
GWAS741661_H GCST90200089 Methylsuccinoylcarnitine levels 8,004 European ancestry individuals T 0.0692172 1E-15 15 rs12208357 0.239199 metabolite measurement (EFO:0004725)
 PMID:36635386
GWAS742983_H GCST90200266 Cis-3,4-methyleneheptanoylcarnitine levels 8,259 European ancestry individuals T 0.0695037 1E-21 21 rs12208357 0.28205 metabolite measurement (EFO:0004725)
 PMID:36635386
GWAS744092_H GCST90200101 Pimeloylcarnitine/3-methyladipoylcarnitine (C7-DC) levels 7,837 European ancestry individuals T 0.0708687 5E-26 25.302 rs12208357 0.313369 pimeloylcarnitine/3-methyladipoylcarnitine (C7-DC) measurement (EFO:0800494)
 PMID:36635386
GWAS744282_H GCST90245489 X-11381 levels 14,296 European ancestry individuals T 0.0769 7E-66 65.155 rs12208357 0.32386535 X-11381 measurement (EFO:0021228)
 PMID:36357675
GWAS746697_H GCST007142 Triglycerides 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C 0.925 9E-9 8.046 rs12208357 0.046 triglyceride measurement (EFO:0004530)
 PMID:29507422
GWAS746698_H GCST007142 Triglycerides 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals C NR 2E-9 8.699 rs12208357 0.046 triglyceride measurement (EFO:0004530)
 PMID:29507422
None Available GCST90299767 Metabolite levels (propionylcarnitine; propionylcarnitine (C3); C3 carnitine; C3_carnitine) 10,622 European, Hispanic or African American individuals T 0.0476 3E-13 12.523 rs12208357 0.237 propionylcarnitine (C3) measurement (EFO:0800210)
 PMID:37253714
GWAS770331_H GCST90302096 Free cholesterol to total lipids ratio in small LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.0707 4E-15 14.398 rs12208357 0.0646 low density lipoprotein cholesterol measurement (EFO:0004611)
free cholesterol:total lipids ratio (EFO:0020945)
 PMID:38448586
GWAS779528_H GCST90295951 Triglyceride to HDL cholesterol ratio 216,649 European ancestry individuals T 0.0703 7E-8 7.155 rs12208357 0.0384 triglyceride:HDL cholesterol ratio (EFO:0007929)
 PMID:38200128
GWAS780153_H GCST90295949 Triglyceride to HDL cholesterol ratio 402,398 European ancestry individuals T 0.07 1E-11 11 rs12208357 0.0417 triglyceride:HDL cholesterol ratio (EFO:0007929)
 PMID:38200128
GWAS780821_H GCST90295950 Triglyceride to HDL cholesterol ratio 185,749 European ancestry individuals T 0.0695 4E-9 8.398 rs12208357 0.044 triglyceride:HDL cholesterol ratio (EFO:0007929)
 PMID:38200128
GWAS801998_H GCST009733 Urinary metabolite levels in chronic kidney disease 1,221 cases T 0.1 8E-16 15.097 rs12208357 0.376 urinary metabolite measurement (EFO:0005116)
 PMID:31959995
GWAS824562_H GCST90013406 Liver enzyme levels (alkaline phosphatase) 437,438 European ancestry individuals C 0.929877 7E-16 15.155 rs12208357 0.00353361 alkaline phosphatase measurement (EFO:0004533)
 PMID:33972514
GWAS831862_H GCST90092875 Concentration of large VLDL particles 115,082 European ancestry individuals C 0.93 2E-11 10.699 rs12208357 0.0526157 very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
GWAS831884_H GCST90092876 Phospholipid levels in large VLDL 115,082 European ancestry individuals C 0.93 3E-12 11.523 rs12208357 0.0545084 very low density lipoprotein cholesterol measurement (EFO:0008317)
phospholipid measurement (EFO:0004639)
 PMID:35213538
None Available GCST90092872 Free cholesterol levels in large VLDL 115,082 European ancestry individuals C 0.93 9E-13 12.046 rs12208357 0.0559279 free cholesterol measurement (EFO:0008591)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
None Available GCST90092862 Total lipid levels in large LDL 115,082 European ancestry individuals C 0.93 5E-12 11.302 rs12208357 0.0555684 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:35213538
None Available GCST90092886 Total lipid levels in LDL 115,082 European ancestry individuals C 0.93 3E-13 12.523 rs12208357 0.0590958 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:35213538
GWAS865490_H GCST90092887 Concentration of LDL particles 115,082 European ancestry individuals C 0.93 6E-16 15.222 rs12208357 0.0655544 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS885175_H GCST90092810 Ratio of apolipoprotein B to apolipoprotein A1 levels 115,082 European ancestry individuals C 0.93 2E-16 15.699 rs12208357 0.0659686 apolipoprotein A 1 measurement (EFO:0004614)
apolipoprotein B measurement (EFO:0004615)
 PMID:35213538
GWAS885287_H GCST90092838 Concentration of IDL particles 115,082 European ancestry individuals C 0.93 8E-15 14.097 rs12208357 0.0624928 intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS886436_H GCST90092839 Phospholipid levels in IDL 115,082 European ancestry individuals C 0.93 2E-13 12.699 rs12208357 0.0573706 phospholipid measurement (EFO:0004639)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS891644_H GCST90092835 Free cholesterol levels in IDL 115,082 European ancestry individuals C 0.93 1E-8 8 rs12208357 0.0446162 free cholesterol measurement (EFO:0008591)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
None Available GCST90092910 Total lipid levels in medium LDL 115,082 European ancestry individuals C 0.93 2E-14 13.699 rs12208357 0.0620741 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:35213538
GWAS904193_H GCST90092928 Monounsaturated fatty acid levels 115,006 European ancestry individuals C 0.930006 4E-11 10.398 rs12208357 0.052959 fatty acid measurement (EFO:0005110)
 PMID:35213538
None Available GCST90092933 Omega-6 fatty acid levels 115,006 European ancestry individuals C 0.930006 2E-11 10.699 rs12208357 0.0533161 omega-6 polyunsaturated fatty acid measurement (EFO:0005680)
 PMID:35213538
None Available GCST90092906 Cholesteryl ester levels in medium LDL 115,082 European ancestry individuals C 0.93 1E-14 14 rs12208357 0.062533 cholesteryl ester measurement (EFO:0010351)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS906301_H GCST90092904 Cholesterol levels in medium LDL 115,082 European ancestry individuals C 0.93 1E-13 13 rs12208357 0.0601986 total cholesterol measurement (EFO:0004574)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS918075_H GCST90010758 Methylglutarylcarnitine levels 22,335 Caucasian ancestry individuals T 0.0774 4E-27 26.398 rs12208357 10.792 carnitine measurement (EFO:0010469)
 PMID:33414548
GWAS919088_H GCST90092831 Cholesterol levels in IDL 115,082 European ancestry individuals C 0.93 8E-9 8.097 rs12208357 0.0453394 total cholesterol measurement (EFO:0004574)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
None Available GCST90092923 Concentration of medium VLDL particles 115,082 European ancestry individuals C 0.93 2E-16 15.699 rs12208357 0.066342 very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
None Available GCST90092911 Concentration of medium LDL particles 115,082 European ancestry individuals C 0.93 2E-14 13.699 rs12208357 0.0623129 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
None Available GCST90092920 Free cholesterol levels in medium VLDL 115,082 European ancestry individuals C 0.93 2E-16 15.699 rs12208357 0.0668896 free cholesterol measurement (EFO:0008591)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
GWAS937676_H GCST90092912 Phospholipid levels in medium LDL 115,082 European ancestry individuals C 0.93 6E-14 13.222 rs12208357 0.061048 low density lipoprotein cholesterol measurement (EFO:0004611)
phospholipid measurement (EFO:0004639)
 PMID:35213538
GWAS937752_H GCST90092924 Phospholipid levels in medium VLDL 115,082 European ancestry individuals C 0.93 4E-17 16.398 rs12208357 0.0681126 very low density lipoprotein cholesterol measurement (EFO:0008317)
phospholipid measurement (EFO:0004639)
 PMID:35213538
None Available GCST90092998 Free cholesterol levels in VLDL 115,082 European ancestry individuals C 0.93 4E-17 16.398 rs12208357 0.0676294 free cholesterol measurement (EFO:0008591)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
None Available GCST90092999 Total lipid levels in VLDL 115,082 European ancestry individuals C 0.93 5E-14 13.302 rs12208357 0.0597818 very low density lipoprotein cholesterol measurement (EFO:0008317)
lipid measurement (EFO:0004529)
 PMID:35213538
None Available GCST90093000 Concentration of VLDL particles 115,082 European ancestry individuals C 0.93 1E-18 18 rs12208357 0.0708882 very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
None Available GCST90092997 Cholesteryl ester levels in VLDL 115,082 European ancestry individuals C 0.93 1E-18 18 rs12208357 0.0715445 cholesteryl ester measurement (EFO:0010351)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
None Available GCST90092922 Total lipid levels in medium VLDL 115,082 European ancestry individuals C 0.93 1E-15 15 rs12208357 0.0644448 very low density lipoprotein cholesterol measurement (EFO:0008317)
lipid measurement (EFO:0004529)
 PMID:35213538
GWAS958016_H GCST90092809 Apolipoprotein B levels 115,082 European ancestry individuals C 0.93 7E-17 16.155 rs12208357 0.0677003 apolipoprotein B measurement (EFO:0004615)
 PMID:35213538
GWAS959081_H GCST90092880 Linoleic acid levels 115,006 European ancestry individuals C 0.930006 2E-12 11.699 rs12208357 0.0559777 linoleic acid measurement (EFO:0006807)
 PMID:35213538
None Available GCST90092821 Glycoprotein acetyls levels 115,082 European ancestry individuals C 0.93 4E-9 8.398 rs12208357 0.0473486 glycoprotein measurement (EFO:0004555)
 PMID:35213538
GWAS960865_H GCST90092972 Free cholesterol levels in small VLDL 115,082 European ancestry individuals C 0.93 2E-17 16.699 rs12208357 0.0691981 free cholesterol measurement (EFO:0008591)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
GWAS961500_H GCST90092970 Cholesteryl ester levels in small VLDL 115,082 European ancestry individuals C 0.93 6E-20 19.222 rs12208357 0.0739446 cholesteryl ester measurement (EFO:0010351)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
GWAS963005_H GCST90092939 Polyunsaturated fatty acid levels 115,006 European ancestry individuals C 0.930006 4E-10 9.398 rs12208357 0.0493745 polyunsaturated fatty acid measurement (EFO:0010733)
 PMID:35213538
None Available GCST90092988 Total free cholesterol levels 115,082 European ancestry individuals C 0.93 2E-12 11.699 rs12208357 0.055726 free cholesterol measurement (EFO:0008591)
 PMID:35213538
None Available GCST90092956 Cholesterol levels in small LDL 115,082 European ancestry individuals C 0.93 2E-14 13.699 rs12208357 0.0623252 total cholesterol measurement (EFO:0004574)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
None Available GCST90092962 Total lipid levels in small LDL 115,082 European ancestry individuals C 0.93 3E-15 14.523 rs12208357 0.0640823 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:35213538
GWAS966362_H GCST90140358 X-11381 levels 6,136 Finnish ancestry individuals T NR 6E-28 27.222 rs12208357 0.43 X-11381 measurement (EFO:0021228)
 PMID:35347128
GWAS969830_H GCST90092976 Phospholipid levels in small VLDL 115,082 European ancestry individuals C 0.93 2E-18 17.699 rs12208357 0.0709191 very low density lipoprotein cholesterol measurement (EFO:0008317)
phospholipid measurement (EFO:0004639)
 PMID:35213538
None Available GCST90179148 Low-density lipoprotein levels (MTAG) 361,194 European ancestry individuals T NR 9E-13 12.046 rs12208357 0.01946 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:36376304
None Available GCST90093028 Cholesterol levels in very small VLDL 115,082 European ancestry individuals C 0.93 3E-15 14.523 rs12208357 0.0619777 total cholesterol measurement (EFO:0004574)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
None Available GCST90092989 Total lipid levels in lipoprotein particles 115,082 European ancestry individuals C 0.93 3E-12 11.523 rs12208357 0.0555516 lipid measurement (EFO:0004529)
lipoprotein measurement (EFO:0004732)
 PMID:35213538
GWAS975411_H GCST90092958 Cholesteryl ester levels in small LDL 115,082 European ancestry individuals C 0.93 4E-16 15.398 rs12208357 0.0661036 cholesteryl ester measurement (EFO:0010351)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
None Available GCST90092987 Total fatty acid levels 115,006 European ancestry individuals C 0.930006 1E-11 11 rs12208357 0.054141 fatty acid measurement (EFO:0005110)
 PMID:35213538
None Available GCST90092964 Phospholipid levels in small LDL 115,082 European ancestry individuals C 0.93 1E-13 13 rs12208357 0.0600124 low density lipoprotein cholesterol measurement (EFO:0004611)
phospholipid measurement (EFO:0004639)
 PMID:35213538
GWAS976182_H GCST90092963 Concentration of small LDL particles 115,082 European ancestry individuals C 0.93 5E-17 16.302 rs12208357 0.0681957 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS976679_H GCST90092968 Cholesterol levels in small VLDL 115,082 European ancestry individuals C 0.93 3E-19 18.523 rs12208357 0.0727963 total cholesterol measurement (EFO:0004574)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
GWAS977933_H GCST90092980 Saturated fatty acid levels 115,006 European ancestry individuals C 0.930006 2E-10 9.699 rs12208357 0.0507871 fatty acid measurement (EFO:0005110)
 PMID:35213538
None Available GCST90092996 VLDL cholesterol levels 115,082 European ancestry individuals C 0.93 2E-18 17.699 rs12208357 0.0709053 very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
GWAS980299_H GCST90093036 Phospholipid levels in very small VLDL 115,082 European ancestry individuals C 0.93 4E-20 19.398 rs12208357 0.0731886 very low density lipoprotein cholesterol measurement (EFO:0008317)
phospholipid measurement (EFO:0004639)
 PMID:35213538
None Available GCST90093032 Free cholesterol levels in very small VLDL 115,082 European ancestry individuals C 0.93 2E-18 17.699 rs12208357 0.0696482 free cholesterol measurement (EFO:0008591)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
GWAS982638_H GCST90093035 Concentration of very small VLDL particles 115,082 European ancestry individuals C 0.93 1E-19 19 rs12208357 0.0724065 very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
None Available GCST90093034 Total lipid levels in very small VLDL 115,082 European ancestry individuals C 0.93 3E-19 18.523 rs12208357 0.0713799 very low density lipoprotein cholesterol measurement (EFO:0008317)
lipid measurement (EFO:0004529)
 PMID:35213538
Database Acc Id Source(s)
GWAS Catalog GCST90093035 GWAS Catalog

RGD Curation Notes
Note Type Note Reference