GWAS978099_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS978099_H (fatty acid measurement QTL GWAS978099 (human)) Homo sapiens

Symbol: GWAS978099_H
Name: fatty acid measurement QTL GWAS978099 (human)
RGD ID: 407329123
Trait: fatty acid measurement
LOD Score: Not Available
P Value: 6.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386160,779,334 - 160,779,335RGD_MAPPER_PIPELINEGRCh38
GRCh376161,200,366 - 161,200,367RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS978099_HHumanfatty acid measurement  IAGPrs185990325405850206 GWAS_CATALOGPMID:35213538
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
38635328LOC107986665plasminogen-like protein B6160773929160898708Human
155652740LOC127407718NANOG hESC enhancer GRCh37_chr6:161200290-1612007916160779258160779759Human

Position Markers

Peak: (rs185990325)
Human AssemblyChrPosition (strand)Source
GRCh386160,779,334 - 160,779,335RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407329123GWAS978099_Hfatty acid measurement QTL GWAS978099 (human)6e-09fatty acid measurement6160779334160779335Human
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human
407326664GWAS975640_Hfatty acid measurement QTL GWAS975640 (human)3e-08fatty acid measurement6160779334160779335Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS975640_H GCST90092987 Total fatty acid levels 115,006 European ancestry individuals A 0.99431 3E-8 7.523 rs185990325 0.157796 fatty acid measurement (EFO:0005110)
 PMID:35213538
GWAS978099_H GCST90092980 Saturated fatty acid levels 115,006 European ancestry individuals A 0.99431 6E-9 8.222 rs185990325 0.165194 fatty acid measurement (EFO:0005110)
 PMID:35213538
Database Acc Id Source(s)
GWAS Catalog GCST90092980 GWAS Catalog

RGD Curation Notes
Note Type Note Reference