GWAS966235_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS966235_H (ceramide measurement QTL GWAS966235 (human)) Homo sapiens

Symbol: GWAS966235_H
Name: ceramide measurement QTL GWAS966235 (human)
RGD ID: 407317259
Trait: ceramide measurement
LOD Score: Not Available
P Value: 4.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386161,870,742 - 161,870,743RGD_MAPPER_PIPELINEGRCh38
GRCh376162,291,774 - 162,291,775RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS966235_HHumanceramide measurement  IAGPrs144332322405850206 GWAS_CATALOGPMID:35668104
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
730938PRKNparkin RBR E3 ubiquitin protein ligase6161347417162727766Human

Position Markers

Peak: (rs144332322)
Human AssemblyChrPosition (strand)Source
GRCh386161,870,742 - 161,870,743RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
407317259GWAS966235_Hceramide measurement QTL GWAS966235 (human)4e-09ceramide measurement6161870742161870743Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS966235_H GCST90024121 Monohexosylceramide (d16:1/20:0) levels 4,492 European ancestry individuals C NR 4E-9 8.398 rs144332322 2.83 ceramide measurement (EFO:0010222)
 PMID:35668104
Database Acc Id Source(s)
GWAS Catalog GCST90024121 GWAS Catalog

RGD Curation Notes
Note Type Note Reference