GWAS963133_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS963133_H (methylmalonate (MMA) measurement QTL GWAS963133 (human)) Homo sapiens

Symbol: GWAS963133_H
Name: methylmalonate (MMA) measurement QTL GWAS963133 (human)
RGD ID: 407314157
Trait: methylmalonate (MMA) measurement
LOD Score: Not Available
P Value: 1E-146
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381689,102,876 - 89,102,877RGD_MAPPER_PIPELINEGRCh38
GRCh371689,169,284 - 89,169,285RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS963133_HHumanmethylmalonate (MMA) measurement  IAGPrs72817438405850206 GWAS_CATALOGPMID:35347128
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1604214ACSF3acyl-CoA synthetase family member 3168909385289156233Human

Position Markers

Peak: (rs72817438)
Human AssemblyChrPosition (strand)Source
GRCh381689,102,876 - 89,102,877RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407314157GWAS963133_Hmethylmalonate (MMA) measurement QTL GWAS963133 (human)1e-146methylmalonate (MMA) measurement168910287689102877Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS963133_H GCST90140220 Methylmalonate (mma) levels 6,136 Finnish ancestry individuals A NR 1E-146 146 rs72817438 0.8 methylmalonate (MMA) measurement (EFO:0800622)
 PMID:35347128
Database Acc Id Source(s)
GWAS Catalog GCST90140220 GWAS Catalog

RGD Curation Notes
Note Type Note Reference