GWAS963042_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS963042_H (lipoprotein A measurement QTL GWAS963042 (human)) Homo sapiens

Symbol: GWAS963042_H
Name: lipoprotein A measurement QTL GWAS963042 (human)
RGD ID: 407314066
Trait: lipoprotein A measurement
LOD Score: Not Available
P Value: 2.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386160,590,967 - 160,590,968RGD_MAPPER_PIPELINEGRCh38
GRCh376161,011,999 - 161,012,000RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS963042_HHumanlipoprotein A measurement  IAGPrs200376184405850206 GWAS_CATALOGPMID:33462484
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1343679LPAlipoprotein(a)6160531482160664275Human

Position Markers

Peak: (rs200376184)
Human AssemblyChrPosition (strand)Source
GRCh386160,590,967 - 160,590,968RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
407314066GWAS963042_Hlipoprotein A measurement QTL GWAS963042 (human)2e-12lipoprotein A measurement6160590967160590968Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS963042_H GCST90019513 Lipoprotein (a) levels 272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals C NR 2E-12 11.699 rs200376184 0.3594 lipoprotein A measurement (EFO:0006925)
 PMID:33462484
Database Acc Id Source(s)
GWAS Catalog GCST90019513 GWAS Catalog

RGD Curation Notes
Note Type Note Reference