GWAS960946_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS960946_H (total cholesterol measurement QTL GWAS960946 (human)) Homo sapiens

Symbol: GWAS960946_H
Name: total cholesterol measurement QTL GWAS960946 (human)
RGD ID: 407311970
Trait: total cholesterol measurement
Measurement Type: blood total cholesterol level   (CMO:0000051)    
LOD Score: Not Available
P Value: 4.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381730,276,810 - 30,276,811RGD_MAPPER_PIPELINEGRCh38
GRCh371728,603,828 - 28,603,829RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS960946_HHumanblood total cholesterol level  IAGPrs56881390405850206Based on the EFO term IDGWAS_CATALOGPMID:34887591

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS960946_HHumantotal cholesterol measurement  IAGPrs56881390405850206 GWAS_CATALOGPMID:34887591
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1312244BLMHbleomycin hydrolase173024820330291944Human

Position Markers

Peak: (rs56881390)
Human AssemblyChrPosition (strand)Source
GRCh381730,276,810 - 30,276,811RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298406BP16_HBlood pressure QTL 16 (human)0.0004Blood pressurehypertension susceptibility171477864740778647Human
407311970GWAS960946_Htotal cholesterol measurement QTL GWAS960946 (human)4e-11total cholesterol measurementblood total cholesterol level (CMO:0000051)173027681030276811Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS960946_H GCST90239676 Total cholesterol levels 1,320,016 European ancestry individuals C 0.0911303 4E-11 10.398 rs56881390 0.0190243 total cholesterol measurement (EFO:0004574)
 PMID:34887591
Database Acc Id Source(s)
GWAS Catalog GCST90239676 GWAS Catalog

RGD Curation Notes
Note Type Note Reference