GWAS960456_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS960456_H (X-18913 measurement QTL GWAS960456 (human)) Homo sapiens

Symbol: GWAS960456_H
Name: X-18913 measurement QTL GWAS960456 (human)
RGD ID: 407311480
Trait: X-18913 measurement
LOD Score: Not Available
P Value: 6.0E-27
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38315,643,959 - 15,643,960RGD_MAPPER_PIPELINEGRCh38
GRCh37315,685,466 - 15,685,467RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS960456_HHumanX-18913 measurement  IAGPrs2470528405850206 GWAS_CATALOGPMID:35347128
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1313273BTDbiotinidase31560136115722516Human

Position Markers

Peak: (rs2470528)
Human AssemblyChrPosition (strand)Source
GRCh38315,643,959 - 15,643,960RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407026538GWAS675514_HN-acetyl-2-aminooctanoate measurement QTL GWAS675514 (human)3e-10N-acetyl-2-aminooctanoate measurement31564395915643960Human
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human
407311480GWAS960456_HX-18913 measurement QTL GWAS960456 (human)6e-27X-18913 measurement31564395915643960Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS675514_H GCST90200183 N-acetyl-2-aminooctanoate levels 8,253 European ancestry individuals G 0.051569 3E-10 9.523 rs2470528 0.212549 N-acetyl-2-aminooctanoate measurement (EFO:0800567)
 PMID:36635386
GWAS960456_H GCST90140504 X-18913 levels 6,136 Finnish ancestry individuals G NR 6E-27 26.222 rs2470528 0.36 X-18913 measurement (EFO:0800795)
 PMID:35347128
Database Acc Id Source(s)
GWAS Catalog GCST90140504 GWAS Catalog

RGD Curation Notes
Note Type Note Reference