GWAS957796_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS957796_H (lipoprotein A measurement QTL GWAS957796 (human)) Homo sapiens

Symbol: GWAS957796_H
Name: lipoprotein A measurement QTL GWAS957796 (human)
RGD ID: 407308820
Trait: lipoprotein A measurement
LOD Score: Not Available
P Value: 2E-947
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386160,598,834 - 160,598,835RGD_MAPPER_PIPELINEGRCh38
GRCh376161,019,866 - 161,019,867RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS957796_HHumanlipoprotein A measurement  IAGPrs6926458405850206 GWAS_CATALOGPMID:33462484
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1343679LPAlipoprotein(a)6160531482160664275Human

Position Markers

Peak: (rs6926458)
Human AssemblyChrPosition (strand)Source
GRCh386160,598,834 - 160,598,835RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407308820GWAS957796_Hlipoprotein A measurement QTL GWAS957796 (human)2e-947lipoprotein A measurement6160598834160598835Human
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
407221119GWAS870095_Hlipoprotein A measurement QTL GWAS870095 (human)5e-16lipoprotein A measurement6160598834160598835Human
407268876GWAS917852_Hapolipoprotein B measurement QTL GWAS917852 (human)2e-29apolipoprotein B measurementblood apoliprotein B level (CMO:0000522)6160598834160598835Human
407308300GWAS957276_Hlow density lipoprotein cholesterol measurement QTL GWAS957276 (human)2e-33low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)6160598834160598835Human
407283674GWAS932650_Htotal cholesterol measurement QTL GWAS932650 (human)5e-28total cholesterol measurementblood total cholesterol level (CMO:0000051)6160598834160598835Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS870095_H GCST008433 Lipoprotein (a) levels in coronary artery disease (percutaneous coronary intervention) 1,402 Han Chinese ancestry individuals G NR 5E-16 15.302 rs6926458 0.34 lipoprotein A measurement (EFO:0006925)
 PMID:31186284
GWAS917852_H GCST90019496 Apolipoprotein B levels 340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals G NR 2E-29 28.699 rs6926458 0.0339 apolipoprotein B measurement (EFO:0004615)
 PMID:33462484
GWAS932650_H GCST90019501 Total cholesterol levels 342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals G NR 5E-28 27.302 rs6926458 0.0329 total cholesterol measurement (EFO:0004574)
 PMID:33462484
GWAS957276_H GCST90019512 Low density lipoprotein cholesterol levels 341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals G NR 2E-33 32.699 rs6926458 0.0362 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:33462484
GWAS957796_H GCST90019513 Lipoprotein (a) levels 272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals G NR 2E-947 946.699 rs6926458 0.2198 lipoprotein A measurement (EFO:0006925)
 PMID:33462484
Database Acc Id Source(s)
GWAS Catalog GCST90019513 GWAS Catalog

RGD Curation Notes
Note Type Note Reference