GWAS957593_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS957593_H (lipoprotein A measurement QTL GWAS957593 (human)) Homo sapiens

Symbol: GWAS957593_H
Name: lipoprotein A measurement QTL GWAS957593 (human)
RGD ID: 407308617
Trait: lipoprotein A measurement
LOD Score: Not Available
P Value: 8.0E-14
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386161,349,779 - 161,349,780RGD_MAPPER_PIPELINEGRCh38
GRCh376161,770,811 - 161,770,812RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS957593_HHumanlipoprotein A measurement  IAGPrs71653628405850206 GWAS_CATALOGPMID:33462484
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
730938PRKNparkin RBR E3 ubiquitin protein ligase6161347417162727766Human

Position Markers

Peak: (rs71653628)
Human AssemblyChrPosition (strand)Source
GRCh386161,349,779 - 161,349,780RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human
407308617GWAS957593_Hlipoprotein A measurement QTL GWAS957593 (human)8e-14lipoprotein A measurement6161349779161349780Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS957593_H GCST90019513 Lipoprotein (a) levels 272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals T NR 8E-14 13.097 rs71653628 0.0458 lipoprotein A measurement (EFO:0006925)
 PMID:33462484
Database Acc Id Source(s)
GWAS Catalog GCST90019513 GWAS Catalog

RGD Curation Notes
Note Type Note Reference