GWAS948234_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS948234_H (ovarian carcinoma QTL GWAS948234 (human)) Homo sapiens

Symbol: GWAS948234_H
Name: ovarian carcinoma QTL GWAS948234 (human)
RGD ID: 407299258
Trait: ovarian carcinoma
LOD Score: Not Available
P Value: 8.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38X23,151,499 - 23,151,500RGD_MAPPER_PIPELINEGRCh38
GRCh37X23,169,616 - 23,169,617RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
8552624PTCHD1-ASPTCHD1 antisense RNA (head to head)X2219300523293146Human

Position Markers

Peak: (rs73468194)
Human AssemblyChrPosition (strand)Source
GRCh38X23,151,499 - 23,151,500RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407299258GWAS948234_Hovarian carcinoma QTL GWAS948234 (human)0.000008ovarian carcinomaX2315149923151500Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS948234_H GCST007728 Epithelial ovarian cancer 3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls ? NR 0.000008 5.097 rs73468194 1.48 ovarian carcinoma (EFO:0001075)
 PMID:30898391
Database Acc Id Source(s)
GWAS Catalog GCST007728 GWAS Catalog

RGD Curation Notes
Note Type Note Reference