GWAS942756_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS942756_H (body mass index QTL GWAS942756 (human)) Homo sapiens

Symbol: GWAS942756_H
Name: body mass index QTL GWAS942756 (human)
RGD ID: 407293780
Trait: body mass index
Measurement Type: body mass index (BMI)   (CMO:0000105)    
LOD Score: Not Available
P Value: 6.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381526,756,340 - 26,756,341RGD_MAPPER_PIPELINEGRCh38
GRCh371527,001,487 - 27,001,488RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS942756_HHumanbody mass index (BMI)  IAGPrs7170907405850206Based on the EFO term IDGWAS_CATALOGPMID:34594039

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS942756_HHumanbody mass index  IAGPrs7170907405850206 GWAS_CATALOGPMID:34594039
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
736139GABRB3gamma-aminobutyric acid type A receptor subunit beta3152654355226773763Human
38643905LOC112268151uncharacterized LOC112268151152674528426772122Human

Position Markers

Peak: (rs7170907)
Human AssemblyChrPosition (strand)Source
GRCh381526,756,340 - 26,756,341RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
407293780GWAS942756_Hbody mass index QTL GWAS942756 (human)6e-12body mass indexbody mass index (BMI) (CMO:0000105)152675634026756341Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS942756_H GCST90018947 Body mass index 359,983 European ancestry individuals, 163,835 East Asian ancestry individuals T NR 6E-12 11.222 rs7170907 0.0135 body mass index (EFO:0004340)
 PMID:34594039
Database Acc Id Source(s)
GWAS Catalog GCST90018947 GWAS Catalog

RGD Curation Notes
Note Type Note Reference