GWAS942729_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS942729_H (Inguinal hernia QTL GWAS942729 (human)) Homo sapiens

Symbol: GWAS942729_H
Name: Inguinal hernia QTL GWAS942729 (human)
RGD ID: 407293753
Trait: Inguinal hernia
LOD Score: Not Available
P Value: 2.0E-21
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381132,436,381 - 32,436,382RGD_MAPPER_PIPELINEGRCh38
GRCh371132,457,927 - 32,457,928RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS942729_HHumanInguinal hernia  IAGPrs2301252405850206 GWAS_CATALOGPMID:34382107
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
38601292LOC107982234WT1/WT1-AS bi-directional promoter region113243016932437423Human
1605386WT1-ASWT1 antisense RNA113243551832458769Human

Position Markers

Peak: (rs2301252)
Human AssemblyChrPosition (strand)Source
GRCh381132,436,381 - 32,436,382RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576345LVC1_HLeft ventricular contractility QTL 1 (human)3.93Left ventricular contractility11797076733970767Human
1559104SCL15_HSerum cholesterol level QTL 15 (human)2.60.06Lipid levelhyperlipidemia susceptibility111589236841892368Human
407293753GWAS942729_HInguinal hernia QTL GWAS942729 (human)2e-21Inguinal hernia113243638132436382Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS942729_H GCST90027168 Inguinal hernia 13,047 European ancestry cases, 262,499 European ancestry controls C 0.64 2E-21 20.699 rs2301252 1.12 Inguinal hernia (HP:0000023)
 PMID:34382107
Database Acc Id Source(s)
GWAS Catalog GCST90027168 GWAS Catalog

RGD Curation Notes
Note Type Note Reference