GWAS941277_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS941277_H (phosphatidylethanolamine measurement QTL GWAS941277 (human)) Homo sapiens

Symbol: GWAS941277_H
Name: phosphatidylethanolamine measurement QTL GWAS941277 (human)
RGD ID: 407292301
Trait: phosphatidylethanolamine measurement
LOD Score: Not Available
P Value: 2.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381161,811,586 - 61,811,587RGD_MAPPER_PIPELINEGRCh38
GRCh371161,579,058 - 61,579,059RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS941277_HHumanphosphatidylethanolamine measurement  IAGPrs138012803405850206 GWAS_CATALOGPMID:35668104
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1344024FADS1fatty acid desaturase 1116179962761817003Human

Position Markers

Peak: (rs138012803)
Human AssemblyChrPosition (strand)Source
GRCh381161,811,586 - 61,811,587RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357380BW64_HBody weight QTL 64 (human)2.2Body weightpercent fat after exercise training116097893786978937Human
407290596GWAS939572_Hphosphatidylethanolamine measurement QTL GWAS939572 (human)4e-09phosphatidylethanolamine measurement116181158661811587Human
407292654GWAS941630_Hphosphatidylethanolamine measurement QTL GWAS941630 (human)1e-10phosphatidylethanolamine measurement116181158661811587Human
407292301GWAS941277_Hphosphatidylethanolamine measurement QTL GWAS941277 (human)2e-11phosphatidylethanolamine measurement116181158661811587Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS939572_H GCST90024430 Alkenylphosphatidylethanolamine (P-18:1/20:3) (a) levels 4,492 European ancestry individuals A NR 4E-9 8.398 rs138012803 0.698 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS941277_H GCST90024416 Alkenylphosphatidylethanolamine (P-18:0/20:3) (a) levels 4,492 European ancestry individuals A NR 2E-11 10.699 rs138012803 0.801 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS941630_H GCST90024401 Alkenylphosphatidylethanolamine (P-16:0/20:3) (a) levels 4,492 European ancestry individuals A NR 1E-10 10 rs138012803 0.771 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
Database Acc Id Source(s)
GWAS Catalog GCST90024416 GWAS Catalog

RGD Curation Notes
Note Type Note Reference